Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C3438_RS16990 Genome accession   NZ_CP026533
Coordinates   3248363..3248827 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain DKU_NT_04     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3243363..3253827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS16970 (C3438_16970) - 3243843..3245663 (+) 1821 WP_104843307.1 PAS domain-containing protein -
  C3438_RS16975 (C3438_16975) - 3245689..3246858 (-) 1170 WP_007611083.1 aminotransferase A -
  C3438_RS22665 - 3247059..3247220 (-) 162 WP_007409608.1 hypothetical protein -
  C3438_RS16985 (C3438_16985) cheV 3247409..3248320 (+) 912 WP_017417674.1 chemotaxis protein CheV -
  C3438_RS16990 (C3438_16990) kre 3248363..3248827 (-) 465 WP_014417605.1 YkyB family protein Regulator
  C3438_RS16995 (C3438_16995) - 3248950..3250242 (-) 1293 WP_014417606.1 MFS transporter -
  C3438_RS17000 (C3438_17000) - 3250318..3250812 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  C3438_RS17005 (C3438_17005) - 3250887..3251750 (-) 864 WP_017417676.1 metallophosphoesterase -
  C3438_RS17010 (C3438_17010) fadH 3251894..3252657 (+) 764 Protein_3266 2,4-dienoyl-CoA reductase -
  C3438_RS17015 (C3438_17015) - 3252771..3253319 (+) 549 WP_017417677.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=270182 C3438_RS16990 WP_014417605.1 3248363..3248827(-) (kre) [Bacillus velezensis strain DKU_NT_04]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=270182 C3438_RS16990 WP_014417605.1 3248363..3248827(-) (kre) [Bacillus velezensis strain DKU_NT_04]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment