Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C3438_RS11305 Genome accession   NZ_CP026533
Coordinates   2167367..2167804 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2162367..2172804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS11280 (C3438_11280) - 2163387..2164523 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  C3438_RS11285 (C3438_11285) - 2164538..2164972 (+) 435 WP_014416871.1 RDD family protein -
  C3438_RS11290 (C3438_11290) - 2165044..2165367 (+) 324 WP_007409357.1 YckD family protein -
  C3438_RS11295 (C3438_11295) - 2165471..2166907 (+) 1437 WP_104843069.1 family 1 glycosylhydrolase -
  C3438_RS11300 (C3438_11300) nin/comJ 2166948..2167346 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  C3438_RS11305 (C3438_11305) nucA/comI 2167367..2167804 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C3438_RS11310 (C3438_11310) hxlB 2168135..2168692 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  C3438_RS11315 (C3438_11315) hxlA 2168689..2169324 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  C3438_RS11320 (C3438_11320) - 2169556..2169918 (+) 363 WP_104843070.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=270162 C3438_RS11305 WP_003156588.1 2167367..2167804(-) (nucA/comI) [Bacillus velezensis strain DKU_NT_04]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=270162 C3438_RS11305 WP_003156588.1 2167367..2167804(-) (nucA/comI) [Bacillus velezensis strain DKU_NT_04]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment