Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C3438_RS09730 Genome accession   NZ_CP026533
Coordinates   1873672..1873962 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868672..1878962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS09690 (C3438_09690) darA 1868689..1869018 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  C3438_RS09695 (C3438_09695) - 1869031..1869471 (+) 441 WP_004264730.1 DUF327 family protein -
  C3438_RS09700 (C3438_09700) holB 1869483..1870472 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  C3438_RS09705 (C3438_09705) ricT 1870475..1871302 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  C3438_RS09710 (C3438_09710) yabA 1871317..1871676 (+) 360 WP_017419498.1 replication initiation-control protein YabA -
  C3438_RS09715 (C3438_09715) - 1871737..1872480 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C3438_RS09720 (C3438_09720) - 1872467..1872766 (+) 300 WP_104843027.1 GIY-YIG nuclease family protein -
  C3438_RS09725 (C3438_09725) rsmI 1872741..1873622 (+) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C3438_RS09730 (C3438_09730) abrB 1873672..1873962 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  C3438_RS09735 (C3438_09735) metG 1874445..1876436 (+) 1992 WP_025650337.1 methionine--tRNA ligase -
  C3438_RS09740 (C3438_09740) - 1876517..1877284 (+) 768 WP_017419495.1 TatD family hydrolase -
  C3438_RS09745 (C3438_09745) - 1877419..1878744 (+) 1326 WP_104843579.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=270157 C3438_RS09730 WP_169510469.1 1873672..1873962(-) (abrB) [Bacillus velezensis strain DKU_NT_04]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=270157 C3438_RS09730 WP_169510469.1 1873672..1873962(-) (abrB) [Bacillus velezensis strain DKU_NT_04]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment