Detailed information NTG0270155

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: C3438_RS09500
• Genome accession: NZ_CP026533
• Coordinates: 1831159..1832271 (+)
• Length: 370 a.a.
• NCBI ID: WP_053285270.1
• Uniprot ID: A0A411A1C1
• Organism: Bacillus velezensis strain DKU_NT_04
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1826159..1837271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3438_RS09475 (C3438_09475)	rnpA	1826873..1827223 (-)	351	WP_004392944.1	ribonuclease P protein component	-
C3438_RS09480 (C3438_09480)	rpmH	1827376..1827510 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
C3438_RS09485 (C3438_09485)	dnaA	1828132..1829472 (+)	1341	WP_004392913.1	chromosomal replication initiator protein DnaA	-
C3438_RS09490 (C3438_09490)	dnaN	1829657..1830793 (+)	1137	WP_007409909.1	DNA polymerase III subunit beta	-
C3438_RS09495 (C3438_09495)	rlbA	1830928..1831143 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
C3438_RS09500 (C3438_09500)	recF	1831159..1832271 (+)	1113	WP_053285270.1	DNA replication/repair protein RecF	Machinery gene
C3438_RS09505 (C3438_09505)	-	1832289..1832534 (+)	246	WP_004392908.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
C3438_RS09510 (C3438_09510)	gyrB	1832591..1834507 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
C3438_RS09515 (C3438_09515)	gyrA	1834723..1837182 (+)	2460	WP_025650119.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42429.38 Da
• Isoelectric Point: 7.3309

>NTDB_id=270155 C3438_RS09500 WP_053285270.1 1831159..1832271(+) (recF) [Bacillus velezensis strain DKU_NT_04]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKNLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=270155 C3438_RS09500 WP_053285270.1 1831159..1832271(+) (recF) [Bacillus velezensis strain DKU_NT_04]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAAATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

3D structure

• AlphaFold DB: A0A411A1C1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.054	100	0.941