Detailed information NTG0027015

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VIBHAR_RS16460
• Genome accession: NC_009783
• Coordinates: 3566747..3567733 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A0AAQ3B1B6
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3561747..3572733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBHAR_RS16445 (VIBHAR_03514)	pncC	3562093..3562575 (-)	483	WP_012128905.1	nicotinamide-nucleotide amidase	-
VIBHAR_RS16450 (VIBHAR_03515)	mutS	3562661..3565222 (+)	2562	WP_012128906.1	DNA mismatch repair protein MutS	-
VIBHAR_RS16455 (VIBHAR_03516)	-	3565288..3566610 (-)	1323	WP_041853460.1	IS4 family transposase	-
VIBHAR_RS16460 (VIBHAR_03517)	rpoS	3566747..3567733 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
VIBHAR_RS16465 (VIBHAR_03518)	-	3567814..3568737 (-)	924	WP_012128908.1	peptidoglycan DD-metalloendopeptidase family protein	-
VIBHAR_RS16470 (VIBHAR_03519)	-	3568752..3569378 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VIBHAR_RS16475 (VIBHAR_03520)	surE	3569378..3570154 (-)	777	WP_012128910.1	5'/3'-nucleotidase SurE	-
VIBHAR_RS16480 (VIBHAR_03521)	truD	3570154..3571197 (-)	1044	WP_012128911.1	tRNA pseudouridine(13) synthase TruD	-
VIBHAR_RS16485 (VIBHAR_03522)	ispF	3571243..3571719 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VIBHAR_RS16490 (VIBHAR_03523)	ispD	3571734..3572444 (-)	711	WP_041853277.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VIBHAR_RS16495 (VIBHAR_03524)	ftsB	3572446..3572727 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=27015 VIBHAR_RS16460 WP_005425361.1 3566747..3567733(-) (rpoS) [Vibrio campbellii ATCC BAA-1116]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=27015 VIBHAR_RS16460 WP_005425361.1 3566747..3567733(-) (rpoS) [Vibrio campbellii ATCC BAA-1116]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A0AAQ3B1B6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857