Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C3438_RS01765 Genome accession   NZ_CP026533
Coordinates   345502..346269 (-) Length   255 a.a.
NCBI ID   WP_065180879.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 340502..351269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS01745 (C3438_01745) - 340705..341517 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  C3438_RS01750 (C3438_01750) ccpN 341543..342181 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  C3438_RS01755 (C3438_01755) glyS 342281..344320 (-) 2040 WP_104842688.1 glycine--tRNA ligase subunit beta -
  C3438_RS01760 (C3438_01760) glyQ 344313..345200 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  C3438_RS01765 (C3438_01765) recO 345502..346269 (-) 768 WP_065180879.1 DNA repair protein RecO Machinery gene
  C3438_RS01770 (C3438_01770) - 346306..346449 (-) 144 WP_007408286.1 YqzL family protein -
  C3438_RS01775 (C3438_01775) era 346604..347509 (-) 906 WP_007408285.1 GTPase Era -
  C3438_RS01780 (C3438_01780) - 347490..347900 (-) 411 WP_013352920.1 cytidine deaminase -
  C3438_RS01785 (C3438_01785) - 348024..348398 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  C3438_RS01790 (C3438_01790) ybeY 348379..348852 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  C3438_RS01795 (C3438_01795) - 348853..350985 (-) 2133 WP_104842689.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29335.94 Da        Isoelectric Point: 8.5625

>NTDB_id=270127 C3438_RS01765 WP_065180879.1 345502..346269(-) (recO) [Bacillus velezensis strain DKU_NT_04]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFISELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=270127 C3438_RS01765 WP_065180879.1 345502..346269(-) (recO) [Bacillus velezensis strain DKU_NT_04]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCTCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment