Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C3438_RS00210 Genome accession   NZ_CP026533
Coordinates   37764..38372 (+) Length   202 a.a.
NCBI ID   WP_014418235.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32764..43372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS00170 (C3438_00170) - 33785..34291 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  C3438_RS00175 (C3438_00175) - 34430..34843 (+) 414 WP_017418017.1 hypothetical protein -
  C3438_RS00180 (C3438_00180) - 34873..35339 (-) 467 Protein_33 YppG family protein -
  C3438_RS00185 (C3438_00185) - 35526..35708 (+) 183 WP_003153532.1 YppF family protein -
  C3438_RS00190 (C3438_00190) - 35747..36115 (-) 369 WP_017418019.1 YppE family protein -
  C3438_RS00195 (C3438_00195) - 36161..36406 (-) 246 WP_014418233.1 DUF5446 family protein -
  C3438_RS00200 (C3438_00200) sspM 36612..36716 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  C3438_RS00205 (C3438_00205) - 36760..37722 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  C3438_RS00210 (C3438_00210) recU 37764..38372 (+) 609 WP_014418235.1 Holliday junction resolvase RecU Machinery gene
  C3438_RS00215 (C3438_00215) - 38411..41113 (+) 2703 WP_104842642.1 PBP1A family penicillin-binding protein -
  C3438_RS00220 (C3438_00220) - 41381..41872 (-) 492 WP_065180548.1 YpoC family protein -
  C3438_RS00225 (C3438_00225) nth 41869..42528 (-) 660 WP_007612187.1 endonuclease III -
  C3438_RS00230 (C3438_00230) dnaD 42547..43245 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=270116 C3438_RS00210 WP_014418235.1 37764..38372(+) (recU) [Bacillus velezensis strain DKU_NT_04]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=270116 C3438_RS00210 WP_014418235.1 37764..38372(+) (recU) [Bacillus velezensis strain DKU_NT_04]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

91.457

98.515

0.901

Multiple sequence alignment