Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3L23_RS07965 Genome accession   NZ_CP026530
Coordinates   1506257..1507561 (+) Length   434 a.a.
NCBI ID   WP_127681565.1    Uniprot ID   A0A3T0L3V8
Organism   Nautilia sp. PV-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1501257..1512561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3L23_RS07935 (C3L23_07950) - 1501977..1502558 (-) 582 WP_127681555.1 MBL fold metallo-hydrolase -
  C3L23_RS07940 (C3L23_07955) rny 1502588..1504147 (-) 1560 WP_127681557.1 ribonuclease Y -
  C3L23_RS07945 (C3L23_07960) - 1504059..1504694 (-) 636 WP_246831059.1 5-formyltetrahydrofolate cyclo-ligase -
  C3L23_RS07950 (C3L23_07965) - 1504738..1505157 (+) 420 WP_127681559.1 hypothetical protein -
  C3L23_RS07955 (C3L23_07970) ftsY 1505157..1506026 (+) 870 WP_127681561.1 signal recognition particle-docking protein FtsY -
  C3L23_RS07960 (C3L23_07975) - 1506019..1506264 (+) 246 WP_127681563.1 hypothetical protein -
  C3L23_RS07965 (C3L23_07980) radA 1506257..1507561 (+) 1305 WP_127681565.1 DNA repair protein RadA Machinery gene
  C3L23_RS07970 (C3L23_07985) - 1507562..1508377 (-) 816 WP_127681567.1 DnaJ domain-containing protein -
  C3L23_RS07975 (C3L23_07990) - 1508367..1509092 (-) 726 WP_127681569.1 class I SAM-dependent methyltransferase -
  C3L23_RS07980 (C3L23_07995) ribD 1509094..1510059 (-) 966 WP_127681571.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  C3L23_RS07985 (C3L23_08000) - 1510077..1510526 (-) 450 WP_127681573.1 ribosome maturation factor RimP -
  C3L23_RS07990 (C3L23_08005) - 1510587..1511393 (-) 807 WP_127681575.1 HAD-IIB family hydrolase -
  C3L23_RS07995 (C3L23_08010) rbfA 1511390..1511743 (-) 354 WP_127681577.1 30S ribosome-binding factor RbfA -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 47682.42 Da        Isoelectric Point: 7.5967

>NTDB_id=270113 C3L23_RS07965 WP_127681565.1 1506257..1507561(+) (radA) [Nautilia sp. PV-1]
MAKKKTVFECIECGYKSAKWMGKCPACGSWETFVEVSEDKGNKKSSSPKAGVLKFEEIEKEEIERFTSGDSELDLVLGGG
IVPGSLVLIGGSPGVGKSTLMMKLAGNINKKVLYVAGEESPGQIKIRADRLGVKNKDLYLMPEIIVENIIDEIKKGYELV
IIDSIQTIYSENLQSAPGSVSQVREATFELMRVAKESKTPVFIIGHITKEGSIAGPRVLEHMVDTVLYFEGDASRELRIL
RAFKNRFGSTSEIGIFEMTKQGLASAKNKSFFSKKALPGSAITVILEGTRPIVLEVQALVSESYSIPKRSATGFDLARLN
MILALLEKKLNLPFNQYDVFINVTGGIKINEPAADLAVMAAIVSSFRDRKISKESVFIGEVSLVGDIRDVPGLDQRIKEA
ANLGFSKAIVPSRPLEENIKCYEVKEVEKLLEWM

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=270113 C3L23_RS07965 WP_127681565.1 1506257..1507561(+) (radA) [Nautilia sp. PV-1]
ATGGCTAAGAAAAAAACAGTTTTTGAATGTATCGAATGCGGATACAAAAGTGCTAAATGGATGGGAAAATGTCCGGCATG
CGGCAGCTGGGAAACATTCGTAGAAGTAAGCGAGGATAAAGGAAACAAAAAATCTTCCTCGCCAAAAGCCGGTGTTTTAA
AATTTGAAGAAATTGAAAAAGAAGAAATTGAAAGATTTACTTCCGGAGACAGCGAACTTGATTTGGTATTAGGAGGCGGT
ATAGTGCCCGGAAGCCTCGTTTTAATAGGAGGAAGCCCGGGAGTCGGAAAATCCACTCTAATGATGAAACTCGCCGGAAA
TATAAACAAAAAAGTTTTATATGTTGCGGGCGAGGAAAGCCCCGGACAGATTAAAATCAGAGCCGACAGACTAGGAGTTA
AAAACAAAGATTTATATTTAATGCCGGAAATCATCGTAGAAAACATAATAGACGAAATAAAAAAAGGCTATGAGCTGGTT
ATTATCGACTCCATACAGACCATATATTCTGAAAACCTTCAATCCGCACCCGGAAGCGTGTCACAGGTCAGGGAAGCCAC
ATTTGAACTTATGAGAGTTGCAAAAGAGAGCAAAACACCGGTATTCATAATAGGACACATAACAAAAGAAGGCTCTATTG
CAGGACCGAGAGTGCTTGAACATATGGTGGACACCGTTTTATATTTCGAAGGAGACGCAAGCCGAGAGCTTAGAATTCTA
AGAGCGTTTAAAAACCGTTTCGGATCAACAAGCGAAATAGGAATATTCGAAATGACAAAACAGGGACTTGCCAGTGCGAA
AAACAAATCGTTTTTCAGCAAAAAAGCTCTTCCGGGAAGCGCCATTACCGTCATACTTGAAGGGACGAGACCAATAGTAC
TTGAAGTACAGGCACTAGTCAGTGAGAGCTACTCCATACCTAAAAGAAGCGCGACGGGATTCGATCTGGCAAGACTTAAT
ATGATTTTAGCCCTGCTTGAAAAAAAACTCAATCTCCCATTTAATCAGTACGACGTATTTATAAACGTAACCGGCGGTAT
CAAAATAAACGAACCCGCAGCCGATCTTGCCGTAATGGCTGCGATAGTCAGCTCGTTTAGGGACAGAAAAATAAGCAAAG
AAAGCGTTTTTATAGGAGAAGTAAGTCTTGTTGGCGACATAAGAGATGTGCCTGGACTTGATCAAAGAATAAAAGAAGCC
GCCAATCTCGGCTTTTCAAAAGCAATTGTTCCGAGCAGACCTCTGGAAGAGAATATCAAATGTTATGAAGTAAAGGAAGT
TGAAAAACTGCTTGAATGGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(330-412)

AAA domain (AAA_25)

(61-211)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0L3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.769

99.539

0.495
  radA Streptococcus pneumoniae Rx1

48.712

98.387

0.479
  radA Streptococcus pneumoniae D39

48.712

98.387

0.479
  radA Streptococcus pneumoniae R6

48.712

98.387

0.479
  radA Streptococcus pneumoniae TIGR4

48.712

98.387

0.479
  radA Streptococcus mitis NCTC 12261

48.712

98.387

0.479
  radA Streptococcus mitis SK321

48.712

98.387

0.479

Multiple sequence alignment