Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PC41400_RS29155 Genome accession   NZ_CP026520
Coordinates   6423095..6424462 (-) Length   455 a.a.
NCBI ID   WP_042235467.1    Uniprot ID   A0A410X4L6
Organism   Paenibacillus chitinolyticus strain KCCM 41400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6418095..6429462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PC41400_RS29130 (PC41400_29275) ispD 6418539..6419240 (-) 702 WP_174446857.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PC41400_RS29135 (PC41400_29280) - 6419340..6420386 (-) 1047 WP_042235474.1 PIN/TRAM domain-containing protein -
  PC41400_RS29140 (PC41400_29285) - 6420549..6420944 (+) 396 WP_042235473.1 hypothetical protein -
  PC41400_RS29145 (PC41400_29290) pssA 6421069..6421815 (-) 747 WP_042235471.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  PC41400_RS29150 (PC41400_29295) disA 6421902..6422981 (-) 1080 WP_042235469.1 DNA integrity scanning diadenylate cyclase DisA -
  PC41400_RS29155 (PC41400_29300) radA 6423095..6424462 (-) 1368 WP_042235467.1 DNA repair protein RadA Machinery gene
  PC41400_RS29160 (PC41400_29305) clpC 6424620..6427067 (-) 2448 WP_042235464.1 ATP-dependent protease ATP-binding subunit ClpC -
  PC41400_RS29165 (PC41400_29310) - 6427114..6428142 (-) 1029 WP_241688924.1 protein arginine kinase -
  PC41400_RS29170 (PC41400_29315) - 6428230..6428748 (-) 519 WP_042235459.1 UvrB/UvrC motif-containing protein -
  PC41400_RS29175 (PC41400_29320) - 6428761..6429222 (-) 462 WP_009674502.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49520.95 Da        Isoelectric Point: 7.1213

>NTDB_id=270090 PC41400_RS29155 WP_042235467.1 6423095..6424462(-) (radA) [Paenibacillus chitinolyticus strain KCCM 41400]
MSKTKTKFICQQCGVETPKWLGKCPGCGAWNSFAEEVETVVKTQGMNSSFLRTKEKPTPIINIESSVEQRVLTDNGELNR
VLGGGFVPGSLILVGGDPGIGKSTLLLQTSHSLTKEGRKVLYISGEESIRQTKLRADRLDAVSPNLYVLCETNMEVVEEA
IQEVQPDFLVIDSIQTVYHPSVSSAPGTVSQVRECTSHFMRIAKLKNIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRVLRAVKNRFGSTNEIGIFEMRETGLAEVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVEIQALVSSTNFPS
PRRMATGIDHNRLSLIMAVLEKRVGLFLQSQDAYLNVAGGVKLDEPAVDLAVAISIASSFKEQPTQAYDAVFGEVGLTGE
VRGVSRIDQRVKEAQKLGFRRVIMPEKSLKGWTPPKGIEVVGVSTVSEALKAALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=270090 PC41400_RS29155 WP_042235467.1 6423095..6424462(-) (radA) [Paenibacillus chitinolyticus strain KCCM 41400]
ATGAGTAAAACAAAAACGAAATTCATCTGCCAGCAGTGCGGGGTTGAAACCCCGAAGTGGCTCGGCAAATGTCCCGGCTG
CGGAGCGTGGAACAGTTTTGCCGAAGAAGTGGAGACGGTTGTCAAGACCCAGGGAATGAATTCTTCTTTCCTGCGGACGA
AAGAAAAACCGACTCCGATCATAAACATAGAAAGCAGTGTTGAACAGCGTGTGCTCACGGATAACGGAGAGCTCAACCGC
GTTTTGGGCGGCGGGTTCGTCCCCGGCTCGCTCATTCTGGTTGGGGGAGACCCCGGCATAGGCAAATCGACGCTGCTCCT
GCAAACCTCGCACTCGCTGACCAAAGAGGGGCGGAAGGTTTTATATATCTCAGGCGAGGAATCGATTCGTCAGACGAAGC
TTCGCGCGGATCGGCTGGATGCCGTTTCGCCGAATCTATACGTGCTCTGCGAAACGAATATGGAAGTGGTTGAAGAGGCG
ATCCAGGAGGTTCAGCCGGATTTTCTGGTCATCGACTCGATTCAGACCGTCTACCATCCAAGCGTATCCTCCGCCCCGGG
AACCGTTTCCCAAGTACGTGAATGCACAAGCCATTTCATGCGCATAGCTAAGCTTAAGAATATAGCGACGGTTCTTGTCG
GCCATGTAACCAAGGAAGGCGCCATTGCAGGACCGCGCCTGCTTGAACATATGGTGGACTGTGTGCTTTATTTTGAAGGG
GAACGGCATCACACCTACCGCGTTTTGCGTGCGGTTAAAAACCGGTTCGGTTCAACGAACGAAATCGGCATCTTCGAAAT
GCGGGAAACCGGGCTGGCCGAAGTGAGCAACCCGTCGGAGCTTTTCTTGTCCGAGCGCCCGCTTGGCGTAGCCGGATCGA
CAGTCGTCGCCAGCATGGAAGGAACGAGACCGGTCCTGGTTGAGATCCAGGCGCTTGTCTCGTCAACCAACTTCCCGTCT
CCGCGAAGAATGGCTACGGGAATCGACCATAACCGGCTGTCACTCATTATGGCGGTCTTGGAGAAACGGGTCGGCCTGTT
CCTTCAGAGTCAGGACGCTTACTTGAACGTAGCCGGCGGAGTCAAACTCGATGAGCCGGCTGTCGATCTGGCGGTGGCGA
TAAGCATCGCCTCCAGCTTCAAAGAGCAGCCGACGCAGGCTTACGACGCCGTGTTCGGTGAGGTCGGGCTCACGGGAGAG
GTCCGCGGCGTATCGCGTATCGACCAGCGGGTCAAGGAAGCGCAGAAGCTCGGCTTCCGGCGCGTCATTATGCCGGAGAA
AAGCCTCAAGGGCTGGACGCCTCCAAAGGGCATCGAAGTGGTCGGCGTAAGTACGGTGTCCGAAGCTTTAAAAGCGGCAT
TGGACTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410X4L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.421

100

0.686
  radA Streptococcus mitis NCTC 12261

59.645

99.121

0.591
  radA Streptococcus mitis SK321

59.424

99.121

0.589
  radA Streptococcus pneumoniae Rx1

59.424

99.121

0.589
  radA Streptococcus pneumoniae D39

59.424

99.121

0.589
  radA Streptococcus pneumoniae R6

59.424

99.121

0.589
  radA Streptococcus pneumoniae TIGR4

59.424

99.121

0.589

Multiple sequence alignment