Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PC41400_RS23215 Genome accession   NZ_CP026520
Coordinates   5123759..5124208 (-) Length   149 a.a.
NCBI ID   WP_129112529.1    Uniprot ID   -
Organism   Paenibacillus chitinolyticus strain KCCM 41400     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5118759..5129208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PC41400_RS23190 (PC41400_23280) - 5121024..5121248 (-) 225 WP_042230104.1 spore germination protein -
  PC41400_RS23195 (PC41400_23285) - 5121465..5121938 (-) 474 WP_042230106.1 GNAT family N-acetyltransferase -
  PC41400_RS23200 (PC41400_23290) - 5121962..5122885 (-) 924 WP_042230108.1 AEC family transporter -
  PC41400_RS23205 (PC41400_23295) - 5123008..5123361 (+) 354 WP_042230110.1 hypothetical protein -
  PC41400_RS23210 (PC41400_23300) - 5123429..5123704 (-) 276 WP_042230113.1 hypothetical protein -
  PC41400_RS23215 (PC41400_23305) nucA/comI 5123759..5124208 (-) 450 WP_129112529.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PC41400_RS23220 (PC41400_23310) - 5124332..5124865 (-) 534 WP_042230117.1 DinB family protein -
  PC41400_RS23225 (PC41400_23315) - 5124966..5126330 (-) 1365 WP_042230119.1 class I SAM-dependent rRNA methyltransferase -
  PC41400_RS23230 (PC41400_23320) - 5126493..5127761 (+) 1269 WP_042230121.1 Na/Pi cotransporter family protein -
  PC41400_RS23235 (PC41400_23325) deoC 5127727..5128404 (-) 678 WP_042230124.1 deoxyribose-phosphate aldolase -
  PC41400_RS23240 (PC41400_23330) - 5128401..5128844 (-) 444 WP_042230126.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16238.63 Da        Isoelectric Point: 10.0839

>NTDB_id=270083 PC41400_RS23215 WP_129112529.1 5123759..5124208(-) (nucA/comI) [Paenibacillus chitinolyticus strain KCCM 41400]
MNKKRKKNKKTASIFLFLLIVLVSVVAKSLGLFDGETGKSTSADQTIYFPSDKYPETAKHIKDAIAKGASSVCTIDRKGA
EENRRQSLAGVATKKNYDRDEWPMAMCAEGGKGADIAYIKPSDNRGAGSWIGNQLDKLPDGTRVEIVVK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=270083 PC41400_RS23215 WP_129112529.1 5123759..5124208(-) (nucA/comI) [Paenibacillus chitinolyticus strain KCCM 41400]
ATGAACAAAAAACGAAAGAAGAACAAGAAAACGGCCTCGATTTTTCTTTTTCTGCTGATTGTACTCGTCTCGGTCGTCGC
TAAAAGCCTCGGATTGTTCGACGGCGAGACGGGCAAGAGCACTTCTGCCGACCAGACGATCTATTTCCCGAGCGACAAGT
ATCCCGAAACCGCTAAGCACATCAAAGACGCGATTGCAAAAGGAGCTTCGTCCGTCTGCACGATCGACCGGAAGGGAGCC
GAGGAGAACCGCAGGCAGTCCCTGGCCGGTGTCGCGACCAAAAAAAATTACGACCGCGACGAATGGCCGATGGCGATGTG
CGCGGAAGGCGGCAAGGGAGCGGATATCGCTTACATCAAACCTTCGGACAACCGGGGGGCCGGATCTTGGATCGGCAATC
AGCTAGATAAACTTCCCGATGGAACGCGGGTCGAGATCGTGGTAAAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(55-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.931

77.852

0.49

Multiple sequence alignment