Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   C3K08_RS12335 Genome accession   NZ_CP026516
Coordinates   2460596..2461138 (+) Length   180 a.a.
NCBI ID   WP_104991567.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2455596..2466138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS12305 - 2456634..2457467 (+) 834 WP_104991562.1 MerR family transcriptional regulator -
  C3K08_RS12310 paaI 2457524..2457895 (+) 372 WP_104991563.1 hydroxyphenylacetyl-CoA thioesterase PaaI -
  C3K08_RS12315 - 2457883..2459016 (-) 1134 WP_104991564.1 DUF4357 domain-containing protein -
  C3K08_RS12320 - 2459138..2459596 (+) 459 WP_104991565.1 DMT family transporter -
  C3K08_RS12325 - 2459593..2460054 (+) 462 WP_104992063.1 DMT family transporter -
  C3K08_RS12330 - 2460051..2460542 (+) 492 WP_104991566.1 MarR family winged helix-turn-helix transcriptional regulator -
  C3K08_RS12335 ddrB 2460596..2461138 (+) 543 WP_104991567.1 single-stranded DNA-binding protein Machinery gene
  C3K08_RS12340 - 2461166..2461594 (-) 429 WP_104991568.1 hypothetical protein -
  C3K08_RS12345 - 2461875..2462453 (-) 579 WP_234009231.1 metallophosphoesterase -
  C3K08_RS12350 rocF 2462617..2463513 (+) 897 WP_104991569.1 arginase -
  C3K08_RS12355 - 2463524..2463751 (+) 228 WP_104991570.1 hypothetical protein -
  C3K08_RS12360 - 2463718..2463999 (-) 282 WP_104991571.1 hypothetical protein -
  C3K08_RS12365 - 2464034..2464288 (+) 255 WP_104991572.1 DUF3248 domain-containing protein -
  C3K08_RS12370 - 2464523..2465002 (+) 480 WP_104991573.1 DUF3809 domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20052.45 Da        Isoelectric Point: 6.8868

>NTDB_id=270059 C3K08_RS12335 WP_104991567.1 2460596..2461138(+) (ddrB) [Deinococcus sp. NW-56]
MLHIEFITDLGARVTVDVESADKLLDVQRQYGRLGWTTGDIPSGGYQFPFDNEPDFDWNLIGARKWTSPDGEELIIHRGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERYAVPGSRPAPAGPRPAPAPAS
RAQPQARPAPAAVADEETPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=270059 C3K08_RS12335 WP_104991567.1 2460596..2461138(+) (ddrB) [Deinococcus sp. NW-56]
ATGCTGCACATCGAATTCATCACCGATCTGGGCGCCCGAGTCACAGTGGACGTGGAGAGCGCCGACAAGCTGCTCGACGT
TCAGCGGCAGTATGGCCGCCTGGGCTGGACGACCGGCGATATCCCGTCCGGGGGCTACCAGTTCCCCTTCGACAACGAAC
CCGACTTCGACTGGAACCTGATCGGCGCCCGCAAGTGGACCAGCCCCGACGGCGAGGAACTGATCATCCACCGGGGGCAC
GCCTACCGCCGCCGCGAGCTGGAGGCCGTGGACAGCCGCAAGATGAAGCTGCCCGCCGCCGTGAAGTACAGCCGGGGCGC
CAAGAACACCGACCCCGAGCACGTCCGCGAAAAGGCCGACGGCGAGTTCGAATACGTCACTCTGGCGATTTTCCGGGGGG
GCAAGCGGCAGGAGCGTTACGCGGTTCCCGGTAGCCGCCCCGCCCCCGCCGGACCCCGCCCCGCTCCGGCCCCCGCGAGC
CGCGCCCAGCCGCAGGCCCGCCCGGCCCCGGCAGCGGTGGCCGACGAGGAAACGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.833

100

0.756

Multiple sequence alignment