Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C3K08_RS04485 Genome accession   NZ_CP026516
Coordinates   879208..879831 (+) Length   207 a.a.
NCBI ID   WP_104991916.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 874208..884831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS04460 - 874534..876462 (+) 1929 WP_104990210.1 endonuclease -
  C3K08_RS04465 - 876440..877549 (-) 1110 WP_104990211.1 erythromycin esterase family protein -
  C3K08_RS04470 - 877588..877992 (+) 405 WP_104990212.1 hypothetical protein -
  C3K08_RS04475 - 878010..878303 (-) 294 WP_104990213.1 hypothetical protein -
  C3K08_RS04480 - 878643..879185 (+) 543 WP_369848473.1 hypothetical protein -
  C3K08_RS04485 comF 879208..879831 (+) 624 WP_104991916.1 ComF family protein Machinery gene
  C3K08_RS18240 - 879888..880055 (+) 168 WP_199776993.1 hypothetical protein -
  C3K08_RS04490 - 880103..880609 (+) 507 WP_104990214.1 hypothetical protein -
  C3K08_RS04495 - 880615..881307 (+) 693 WP_234009161.1 DUF2259 domain-containing protein -
  C3K08_RS04500 - 881357..883006 (-) 1650 WP_104990215.1 VOC family protein -
  C3K08_RS04505 - 883074..883559 (-) 486 WP_104990216.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21895.34 Da        Isoelectric Point: 11.2583

>NTDB_id=270048 C3K08_RS04485 WP_104991916.1 879208..879831(+) (comF) [Deinococcus sp. NW-56]
MGDLLRALLPRPCPGCEAQLGRERGLCPACRATLTPRVETYSPLSSRPTPHLVTLGPYRGVSRRAVRALKFGGARDLAGA
LGERVAAGVPPEWGVRAVVPVPLHSSRERERGFNQAELLGQAVAAELGVPCVPALRRTRATAQQARLHAAERGANLAGAF
QADTRRLPAGPVLLLDDVLTTGHTLLACRDALHAAGAGRVYFAVVAR

Nucleotide


Download         Length: 624 bp        

>NTDB_id=270048 C3K08_RS04485 WP_104991916.1 879208..879831(+) (comF) [Deinococcus sp. NW-56]
CTGGGCGACCTGCTGCGGGCGCTGCTGCCCCGCCCCTGCCCCGGCTGCGAGGCGCAACTGGGCCGCGAGCGCGGGCTGTG
CCCGGCCTGTCGCGCCACGCTCACGCCGCGCGTGGAGACTTACTCGCCCCTCTCGTCCCGGCCCACCCCCCACCTCGTCA
CCCTGGGGCCGTACCGGGGCGTCTCCCGCCGGGCCGTGCGGGCGCTGAAGTTCGGCGGGGCACGGGACCTCGCGGGGGCG
CTGGGGGAGAGGGTGGCGGCGGGCGTGCCGCCGGAGTGGGGGGTGCGGGCGGTCGTCCCCGTCCCCCTCCATTCTTCCCG
CGAGCGTGAACGGGGCTTCAACCAGGCCGAGTTGCTGGGTCAGGCGGTCGCCGCGGAGCTGGGCGTTCCCTGCGTCCCTG
CCCTGCGCCGCACCCGTGCCACGGCTCAGCAGGCCCGGCTGCACGCGGCCGAGCGTGGGGCCAACCTTGCTGGGGCGTTT
CAGGCCGATACGCGGCGGCTCCCGGCTGGCCCAGTCCTTCTGCTGGATGACGTGCTGACCACTGGCCATACCTTGTTGGC
CTGCCGCGACGCCTTGCACGCGGCGGGCGCGGGGCGGGTCTATTTCGCGGTCGTCGCCCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(120-206)

Double zinc ribbon domain (DZR_2)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

71.498

100

0.715

Multiple sequence alignment