Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C3K08_RS03595 Genome accession   NZ_CP026516
Coordinates   704498..705157 (-) Length   219 a.a.
NCBI ID   WP_104990069.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 699498..710157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS03565 - 700217..701026 (-) 810 WP_104990064.1 group III truncated hemoglobin -
  C3K08_RS18235 - 701088..701717 (-) 630 WP_199776982.1 hypothetical protein -
  C3K08_RS03575 - 701871..702698 (+) 828 WP_104990065.1 helical backbone metal receptor -
  C3K08_RS03580 - 702595..703188 (-) 594 WP_104990066.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  C3K08_RS03585 - 703233..703694 (-) 462 WP_104990067.1 hypothetical protein -
  C3K08_RS03590 - 703815..704423 (-) 609 WP_104990068.1 GNAT family N-acetyltransferase -
  C3K08_RS03595 recR 704498..705157 (-) 660 WP_104990069.1 recombination mediator RecR Machinery gene
  C3K08_RS03600 - 705183..705473 (-) 291 WP_104990070.1 YbaB/EbfC family nucleoid-associated protein -
  C3K08_RS03605 - 705543..706220 (-) 678 WP_104990071.1 NUDIX domain-containing protein -
  C3K08_RS03610 - 706317..708290 (-) 1974 WP_234009148.1 amylo-alpha-1,6-glucosidase -
  C3K08_RS03615 infC 708400..709020 (+) 621 WP_104990073.1 translation initiation factor IF-3 -
  C3K08_RS03620 - 709135..709380 (+) 246 WP_104990074.1 glutaredoxin domain-containing protein -
  C3K08_RS03625 - 709520..709942 (+) 423 WP_104990075.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23822.36 Da        Isoelectric Point: 5.6756

>NTDB_id=270047 C3K08_RS03595 WP_104990069.1 704498..705157(-) (recR) [Deinococcus sp. NW-56]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLAGALLSAKRELHTCPVCFNITDAERCDVCSDPSRDQS
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPERLHIRPLLPRVQQGMEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALSGRRRVSEATAPPLRKPEDEGPEPTSAPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=270047 C3K08_RS03595 WP_104990069.1 704498..705157(-) (recR) [Deinococcus sp. NW-56]
ATGAAGTACCCACCCAGTCTGGTCGCCCTGATCCGCGAGCTGTCGCGCCTGCCGGGGATCGGCCCCAAGAGTGCCCAGCG
GCTGGCCTTTCACCTGTTCGAGCAGCCGCGCGAGGACATCGAGCGGCTGGCCGGGGCGCTGCTCTCGGCCAAGCGCGAAC
TGCACACCTGCCCGGTCTGCTTCAACATCACCGACGCCGAGCGCTGCGACGTGTGCAGCGACCCCTCCCGCGACCAGAGC
GTGATCTGCGTGGTCGAGGAACCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGGGGCCTCTACCACGTGCT
GCACGGGGTCCTGAGCCCGATGAACGGCGTCGGCCCCGAGCGGCTGCATATCCGGCCCCTGCTGCCACGCGTGCAGCAGG
GCATGGAGGTCATCCTGGCGACCGGGACCACCGTGGAGGGGGACGCCACCGCGCTCTACCTTCAGCGGCTGCTTGAACCG
CTGGGCGCGGTCGTGAGCCGCATCGCCTACGGCCTCCCGGTGGGCGGGGCGCTGGAATACGCCGACGAGGTGACGCTGGG
CCGGGCACTCAGCGGACGGCGCCGGGTCAGCGAGGCCACCGCGCCCCCGCTCCGCAAGCCGGAAGACGAGGGACCCGAGC
CGACCTCCGCCCCGTTCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(80-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

82.11

99.543

0.817

Multiple sequence alignment