Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3K22_RS01935 Genome accession   NZ_CP026503
Coordinates   381132..382508 (+) Length   458 a.a.
NCBI ID   WP_005720413.1    Uniprot ID   A0A2A7RGN6
Organism   Lactobacillus crispatus strain AB70     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 376132..387508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K22_RS01900 (C3K22_01910) - 376184..376366 (+) 183 WP_005720404.1 hypothetical protein -
  C3K22_RS01905 (C3K22_01915) - 376378..377058 (+) 681 WP_126708790.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  C3K22_RS01910 (C3K22_01920) - 377169..378104 (+) 936 WP_005724201.1 AAA family ATPase -
  C3K22_RS01915 (C3K22_01925) - 378168..378572 (-) 405 WP_005725567.1 hypothetical protein -
  C3K22_RS01920 (C3K22_01930) pepC 378732..380081 (-) 1350 WP_005725566.1 aminopeptidase C -
  C3K22_RS01925 (C3K22_01935) - 380150..380449 (-) 300 WP_005725564.1 hypothetical protein -
  C3K22_RS01930 (C3K22_01940) - 380581..381132 (+) 552 WP_005720412.1 dUTP diphosphatase -
  C3K22_RS01935 (C3K22_01945) radA 381132..382508 (+) 1377 WP_005720413.1 DNA repair protein RadA Machinery gene
  C3K22_RS01940 (C3K22_01950) gltX 382586..384085 (+) 1500 WP_005726795.1 glutamate--tRNA ligase -
  C3K22_RS01945 (C3K22_01955) cysS 384176..385609 (+) 1434 WP_005724208.1 cysteine--tRNA ligase -
  C3K22_RS01950 (C3K22_01960) - 385602..386045 (+) 444 WP_005726794.1 mini-ribonuclease III -
  C3K22_RS01955 (C3K22_01965) rlmB 386032..386787 (+) 756 WP_005724210.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C3K22_RS01960 (C3K22_01970) - 386921..387466 (+) 546 WP_005724212.1 DNA-directed RNA polymerase subunit sigma -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50214.83 Da        Isoelectric Point: 7.1405

>NTDB_id=269971 C3K22_RS01935 WP_005720413.1 381132..382508(+) (radA) [Lactobacillus crispatus strain AB70]
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKLDKIKAEKEERIVTKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDI
REQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGL
TGEVRRVDKIDARVKEAAKVGFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=269971 C3K22_RS01935 WP_005720413.1 381132..382508(+) (radA) [Lactobacillus crispatus strain AB70]
ATGGCTAGAGTAAAAACACAATATAAGTGTCGTTCTTGCGGCTATATTTCGGCAAGCTATTTAGGCCGCTGCCCTAACTG
TGGTGCTTGGAATCAATTTGAAAAAGAAACTGAAGAAGTGCAAAAGCGTTCTACTAAGGCAACTGCTAGTCGTTTGATTC
AGAAGACTGGATTAAATGAACCGGTAAAGCTGGATAAGATTAAAGCTGAAAAAGAAGAACGAATTGTCACTAAATCTGAG
GAATTAAACCGCGTTTTAGGTGGTGGTATTGTGCCAGGCTCACTAGTTTTAATTGGTGGAGATCCCGGAATTGGTAAGTC
AACCTTGATGTTACAAATTATGAGTGACTTATCTGAAAAATATAAGGTGCTTTACGTTTCGGGAGAAGAATCAGCTAACC
AAATCAAATTGCGGGCTGACCGACTGGGTGTAGGTCAAAGTAATATGCTCTTATATCCAGAGACTGACATGCATGATATT
CGCGAACAAATCAATGATGTTAAGCCTGACTTTGTTGTAATCGACTCCATTCAAACTATGAATGAACCAAGTCTTGATTC
GATGACTGGCTCTGCCTCACAGGTTCGTGAAGTAACAAGTGAATTAATGAAAATTGCCAAGATGGATGCCATTACAGTTT
TTGTTATCGGCCACGTTACAAAAGAGGGTGCGATTGCTGGGCCTAAGATCTTGGAACATATGGTGGATACCGTTCTCTAT
TTTGAAGGGGATGAACACCATTCTTACCGAATTTTGCATTCTGTTAAAAACCGTTTTGGAGCAGCAAACGAAATTGGAAT
GTTTGAAATGGTTAATGAAGGCTTAAGAGAGGTAACTAATCCATCATCAATTTTTCTGGACCAAAGATTACCTAATTCTA
CTGGCTCTGCTGTGGTGGTATCGCTTGAAGGAACTAGGCCACTTTTAGCAGAAATTCAGGCTTTGGTTACTCCGACAGCT
TTTGGCTATGCTAAAAGGACCACGTCAGGTATTAGTTTTAACAAAGCTTCATTGCTGCTAGCGGTGCTTGAAAAGCGGGG
AAACTTAATGTTGCAGAATCAAGATGTCTATTTGACTGCAACTGGTGGGATTAAATTGAATGAACCAGCAATTGATTTAG
CAATTGCCATGGCAGTTGCATCCAGTTATACCGATAAAGAAATTTCGCCGACAGATTGTTTTGTAGGCGAAGTGGGCTTA
ACTGGTGAAGTTCGCCGAGTTGATAAAATCGATGCACGAGTAAAAGAAGCGGCTAAAGTAGGGTTTAAGCGGATCTTTAT
TCCACGGCATAATATGTATTCTGGATTAAAAGATCATGGCATTGAGGTAATTCCCGTTTCGAGTATTCCCCAAGCTTTAA
AATTAGTTTTTGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-223)

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7RGN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

57.549

99.782

0.574
  radA Streptococcus pneumoniae D39

57.549

99.782

0.574
  radA Streptococcus pneumoniae R6

57.549

99.782

0.574
  radA Streptococcus pneumoniae TIGR4

57.549

99.782

0.574
  radA Streptococcus mitis SK321

57.549

99.782

0.574
  radA Streptococcus mitis NCTC 12261

57.549

99.782

0.574
  radA Bacillus subtilis subsp. subtilis str. 168

55.773

100

0.559

Multiple sequence alignment