Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | C3L41_RS08005 | Genome accession | NZ_CP026502 |
| Coordinates | 1575289..1577535 (-) | Length | 748 a.a. |
| NCBI ID | WP_014025304.1 | Uniprot ID | F9VFH0 |
| Organism | Lactococcus garvieae strain JJJN1 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1570289..1582535
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3L41_RS07975 | uvrB | 1570440..1572428 (-) | 1989 | WP_014025300.1 | excinuclease ABC subunit UvrB | - |
| C3L41_RS07980 | - | 1572425..1572880 (-) | 456 | WP_014025301.1 | RNA pyrophosphohydrolase | - |
| C3L41_RS07985 | def | 1572986..1573612 (+) | 627 | WP_014025302.1 | peptide deformylase | - |
| C3L41_RS07990 | - | 1573655..1573900 (-) | 246 | WP_016170852.1 | hypothetical protein | - |
| C3L41_RS07995 | - | 1574036..1574914 (-) | 879 | WP_014025303.1 | HNH endonuclease | - |
| C3L41_RS08000 | - | 1575072..1575233 (-) | 162 | WP_231844102.1 | hypothetical protein | - |
| C3L41_RS08005 | clpC | 1575289..1577535 (-) | 2247 | WP_014025304.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| C3L41_RS08010 | rpoD | 1577757..1578983 (-) | 1227 | WP_308203563.1 | RNA polymerase sigma factor RpoD | - |
| C3L41_RS10560 | - | 1578996..1579154 (-) | 159 | Protein_1585 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| C3L41_RS08015 | dnaG | 1579175..1581061 (-) | 1887 | WP_014025305.1 | DNA primase | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83428.43 Da Isoelectric Point: 4.7434
>NTDB_id=269954 C3L41_RS08005 WP_014025304.1 1575289..1577535(-) (clpC) [Lactococcus garvieae strain JJJN1]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLSQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARAELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLSQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARAELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=269954 C3L41_RS08005 WP_014025304.1 1575289..1577535(-) (clpC) [Lactococcus garvieae strain JJJN1]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCTGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTATCCCAAAAAATTGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATTCTTAAACCGGCTTTAGCACGTGCCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCAGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCTGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCGATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCTGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTATCCCAAAAAATTGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATTCTTAAACCGGCTTTAGCACGTGCCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCAGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCTGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCGATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.541 |
99.332 |
0.86 |
| clpE | Streptococcus mutans UA159 |
76.556 |
100 |
0.773 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.291 |
97.727 |
0.755 |
| clpE | Streptococcus pneumoniae Rx1 |
77.291 |
97.727 |
0.755 |
| clpE | Streptococcus pneumoniae D39 |
77.291 |
97.727 |
0.755 |
| clpE | Streptococcus pneumoniae R6 |
77.291 |
97.727 |
0.755 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
52.809 |
83.289 |
0.44 |
| clpC | Streptococcus pneumoniae D39 |
45.879 |
85.963 |
0.394 |
| clpC | Streptococcus pneumoniae Rx1 |
45.879 |
85.963 |
0.394 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.723 |
85.963 |
0.393 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.471 |
81.952 |
0.389 |
| clpC | Streptococcus mutans UA159 |
46.365 |
82.754 |
0.384 |
| clpC | Streptococcus thermophilus LMD-9 |
45.527 |
83.69 |
0.381 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.161 |
82.888 |
0.374 |