Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CH613_RS01440 Genome accession   NZ_CP031684
Coordinates   280803..282650 (-) Length   615 a.a.
NCBI ID   WP_012054612.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P652-8881     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275803..287650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH613_RS01430 (CH613_01430) lptD 276553..278901 (+) 2349 WP_105197710.1 LPS assembly protein LptD -
  CH613_RS01435 (CH613_01435) proS 278989..280707 (-) 1719 WP_012054611.1 proline--tRNA ligase -
  CH613_RS01440 (CH613_01440) recQ 280803..282650 (-) 1848 WP_012054612.1 DNA helicase RecQ Machinery gene
  CH613_RS01445 (CH613_01445) cyaY 282652..282957 (-) 306 WP_005685901.1 iron donor protein CyaY -
  CH613_RS01450 (CH613_01450) - 283055..283171 (+) 117 WP_005665069.1 lipoprotein -
  CH613_RS01455 (CH613_01455) lysA 283219..284466 (+) 1248 WP_005685899.1 diaminopimelate decarboxylase -
  CH613_RS01460 (CH613_01460) - 284672..285298 (+) 627 WP_005629869.1 response regulator -
  CH613_RS01465 (CH613_01465) - 285360..285800 (-) 441 WP_005648547.1 DUF2489 domain-containing protein -
  CH613_RS01470 (CH613_01470) yihI 285804..286364 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 69707.14 Da        Isoelectric Point: 8.0094

>NTDB_id=269906 CH613_RS01440 WP_012054612.1 280803..282650(-) (recQ) [Haemophilus influenzae strain P652-8881]
MQDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERITESLRNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIVVLRGMHNQKIIELQHDKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEELELAMPRISSISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGLPFIKLIQEHKAILANA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=269906 CH613_RS01440 WP_012054612.1 280803..282650(-) (recQ) [Haemophilus influenzae strain P652-8881]
ATGCAGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTTGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTCATTAATGCCACTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGTAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACGTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCGCATTGTATTTCTCAATGGGGGCATGAT
TTTCGCCCTGAATATACCCAGCTTGGTGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAACATTCGTTATACCTTGGAAGAAAAATATAAACCAATGGAGCAATTGACACGTTTTGTGTTGGCTCAAAAGGGCAAG
AGTGGGATTATTTATTGCAACAGTCGAAACAAGGTTGAACGAATTACGGAAAGTTTACGCAATAAAGGTGTCTCTGCCGC
AGCTTATCACGCGGGAATGGAAACGGCACGGCGTGATCGTGTGCAACAGGATTTTCAGCGTGATAATGTGCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGGTTTGTTGCCCATTTTGATTTGCCTCGTAGCATT
GAATCTTATTATCAAGAAACAGGTCGGGCAGGACGTGATGATTTACCTGCTGAGGCGGTTTTGTTTTATGAACCAGCGGA
TTACGCTTGGTTACAAAAAATTCTTTTAGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAGCATAAATTAGAAGCTA
TTGGAGAATTTGCAGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGTGAGCATCGACAAACACCATGC
AATAACTGTGATATATGCCTTGATCCTCCTAAAAAATATGATGGATTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGGCAATGTTTCGGTGCGCATTATGTGATAGTGGTGTTGCGTGGAATGCATAATCAGAAAATTATTGAACTCC
AGCACGATAAACTTTCAGTGTATGGTATCGGAAAAGATAAAAGCAAAGAGCATTGGCAGTCTGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTCATCAGTGAATTAAATCCAACGTTGCAGCTTACCGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAAGAGTTAGAACTGGCAATGCCTCGTATTTCTTCAATCAGTAAAATTGCCCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCA
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGTTCAATTAAATTAGAACGCTTTGGGCTGCCTTTTATTAAACTTATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

DEAD/DEAH box helicase (DEAD)

(32-191)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)

RQC domain (RQC)

(409-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.597

96.911

0.384