Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C3K24_RS24270 Genome accession   NZ_CP026491
Coordinates   4723788..4724417 (+) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli strain HS13-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4718788..4729417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K24_RS24245 (C3K24_24240) ycbZ 4719188..4720948 (-) 1761 WP_000156501.1 Lon protease family protein -
  C3K24_RS24250 (C3K24_24245) matP 4721134..4721586 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  C3K24_RS24255 (C3K24_24250) ompA 4721664..4722704 (-) 1041 WP_001350588.1 porin OmpA -
  C3K24_RS24265 (C3K24_24260) sulA 4723060..4723569 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  C3K24_RS24270 (C3K24_24265) sxy/tfoX 4723788..4724417 (+) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C3K24_RS24275 (C3K24_24270) yccS 4724380..4726542 (-) 2163 WP_000875041.1 YccS family putative transporter -
  C3K24_RS24280 (C3K24_24275) yccF 4726552..4726998 (-) 447 WP_001261236.1 YccF domain-containing protein -
  C3K24_RS24285 (C3K24_24280) helD 4727121..4729175 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=269886 C3K24_RS24270 WP_000839137.1 4723788..4724417(+) (sxy/tfoX) [Escherichia coli strain HS13-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=269886 C3K24_RS24270 WP_000839137.1 4723788..4724417(+) (sxy/tfoX) [Escherichia coli strain HS13-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986

Multiple sequence alignment