Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CH621_RS02725 Genome accession   NZ_CP031683
Coordinates   544015..544518 (-) Length   167 a.a.
NCBI ID   WP_105872341.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P662-7189     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 539015..549518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH621_RS02700 (CH621_02700) - 539148..540200 (+) 1053 WP_105872340.1 extracellular solute-binding protein -
  CH621_RS02705 (CH621_02705) hslU 540270..541604 (-) 1335 WP_005666443.1 HslU--HslV peptidase ATPase subunit -
  CH621_RS02710 (CH621_02710) hslV 541615..542142 (-) 528 WP_011272086.1 ATP-dependent protease subunit HslV -
  CH621_RS02715 (CH621_02715) aphA 542362..543069 (+) 708 WP_005652021.1 acid phosphatase AphA -
  CH621_RS09800 (CH621_02720) - 543116..543913 (-) 798 Protein_503 IS3 family transposase -
  CH621_RS02725 (CH621_02725) luxS 544015..544518 (-) 504 WP_105872341.1 S-ribosylhomocysteine lyase Regulator
  CH621_RS02730 (CH621_02730) - 544848..545321 (-) 474 WP_005656551.1 YqaA family protein -
  CH621_RS02735 (CH621_02735) - 545321..545923 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  CH621_RS02740 (CH621_02740) - 546039..546416 (+) 378 WP_042611909.1 PRD domain-containing protein -
  CH621_RS02745 (CH621_02745) rsmG 546556..547167 (+) 612 WP_005652031.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CH621_RS02750 (CH621_02750) - 547293..547667 (+) 375 WP_011272082.1 ATP synthase subunit I -
  CH621_RS02755 (CH621_02755) atpB 547704..548492 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  CH621_RS02760 (CH621_02760) atpE 548548..548802 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  CH621_RS02765 (CH621_02765) atpF 548852..549322 (+) 471 WP_005629246.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.24 Da        Isoelectric Point: 4.8168

>NTDB_id=269854 CH621_RS02725 WP_105872341.1 544015..544518(-) (luxS) [Haemophilus influenzae strain P662-7189]
MPLLDSFKVDHTKMNVPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=269854 CH621_RS02725 WP_105872341.1 544015..544518(-) (luxS) [Haemophilus influenzae strain P662-7189]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGTACCTGCAGTACGCATTGCAAAAACGATGCTCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCATTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

99.401

0.731