Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   VIBHAR_RS06450 Genome accession   NC_009783
Coordinates   1373673..1377053 (+) Length   1126 a.a.
NCBI ID   WP_041853399.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368673..1382053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS06425 (VIBHAR_01357) sucC 1368765..1369931 (+) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -
  VIBHAR_RS06430 (VIBHAR_01358) sucD 1369931..1370803 (+) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  VIBHAR_RS06435 (VIBHAR_01359) znuB 1370934..1371719 (-) 786 WP_012127266.1 zinc ABC transporter permease subunit ZnuB -
  VIBHAR_RS06440 (VIBHAR_01360) znuC 1371712..1372500 (-) 789 WP_012127267.1 zinc ABC transporter ATP-binding protein ZnuC -
  VIBHAR_RS06445 (VIBHAR_01361) znuA 1372579..1373460 (+) 882 WP_012127268.1 zinc ABC transporter substrate-binding protein ZnuA -
  VIBHAR_RS06450 (VIBHAR_01362) tfoS 1373673..1377053 (+) 3381 WP_041853399.1 AraC family transcriptional regulator Regulator
  VIBHAR_RS06455 (VIBHAR_01363) - 1377803..1378030 (+) 228 WP_012127270.1 FeoA family protein -
  VIBHAR_RS06460 (VIBHAR_01364) feoB 1378030..1380306 (+) 2277 WP_012127271.1 Fe(2+) transporter permease subunit FeoB -
  VIBHAR_RS06465 (VIBHAR_01365) - 1380303..1380533 (+) 231 WP_012127272.1 FeoC-like transcriptional regulator -
  VIBHAR_RS06470 (VIBHAR_01366) - 1380641..1381162 (-) 522 WP_005426711.1 YqhA family protein -
  VIBHAR_RS06475 (VIBHAR_01367) - 1381313..1381741 (-) 429 WP_041853226.1 HIT family protein -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126934.23 Da        Isoelectric Point: 5.8242

>NTDB_id=26976 VIBHAR_RS06450 WP_041853399.1 1373673..1377053(+) (tfoS) [Vibrio campbellii ATCC BAA-1116]
MLRQIALFFGAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYYKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGVQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFDIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGTDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSSGLEIYSLKNL
QQMTFPYLQVIAGKTIDHITADGPNRLWISSGYQLFNIDAVNQAMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASRLIGLDSK
FTVLKPWYLSKLAISGFTLAVIAVLALLMYSRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPSDVDSVTQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEITWPCAQEPSDVEEALTEFAQTQQSQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=26976 VIBHAR_RS06450 WP_041853399.1 1373673..1377053(+) (tfoS) [Vibrio campbellii ATCC BAA-1116]
TTGCTGCGCCAAATAGCCCTATTTTTTGGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTCATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGTCAAACCACACTGCCAAAATCCGGTAGCTTCCTCAGAAAC
AAAGTAGAGCAGTTGGCTTACTACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTGTATCAAACTTATCCGAACCA
AGAGCGCCGTTTAGTCTTTAGCCTCAACCCTGGCTCTCAGATCCGTAAGATTGGTTCATCCGGAAACTATATTTGGGTCA
GTGATGGTGTGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTGCAGCTCTATCAGCAT
AGCAATAACAGTTACGTCTATATTAACGACGCTATCTTTGTCGAAACCAAGTGGGCGTTGGCGACAACTTCAGGCGTATA
CCTATCAGAGGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATCGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGCACTTTAAAAGGCGCGTTGATATTTGATATCTATGAGCCAGGCAAGCCTGTTATTCGAATT
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCCAGTACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAACAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACTGGAACCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAACAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAAAGGCTCTGGGTTGCTACGTCCTCGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTGCAAGTCATCGCAGGCAAGACAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGGCTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTGTCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTTAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAATTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGCGTTTGATCGGATTAGATTCCAAA
TTTACGGTGCTTAAACCATGGTACCTATCTAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTCGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGCTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGCTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTAGTGATGTGGATTCGGTAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGATACCAGCAGCGGCAGTCAAAACTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGCATTTCACTAGAAAGCTTTAACCTAGATGTCATTTTTAACAGCATCTTTGCCAATATCAT
CAAGCGTTCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAGATAGAGATTACGTGGCC
ATGTGCTCAAGAGCCAAGCGATGTTGAGGAGGCGCTTACTGAGTTTGCTCAGACACAGCAATCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGCTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCCGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCATCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGTTAGCAGGTGAGAAGATCAGTGAAGTGGCCTTCAACTGCG
GCTTCAATGACCCATCCTACTTTAGTCAGAAATTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.518

99.556

0.393

Multiple sequence alignment