Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CH628_RS03420 Genome accession   NZ_CP031681
Coordinates   653989..654591 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain P669-6977     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 648989..659591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH628_RS03400 (CH628_03400) - 649353..651023 (+) 1671 WP_011272054.1 fructose-specific PTS transporter subunit EIIC -
  CH628_RS03410 (CH628_03410) secG 651568..651909 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  CH628_RS03415 (CH628_03415) - 652018..653973 (-) 1956 WP_011272053.1 DNA topoisomerase III -
  CH628_RS03420 (CH628_03420) recR 653989..654591 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  CH628_RS03425 (CH628_03425) - 654722..655051 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH628_RS03430 (CH628_03430) - 655220..656065 (-) 846 WP_011272052.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH628_RS03435 (CH628_03435) - 656138..658732 (-) 2595 WP_011272051.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=269731 CH628_RS03420 WP_005626527.1 653989..654591(-) (recR) [Haemophilus influenzae strain P669-6977]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=269731 CH628_RS03420 WP_005626527.1 653989..654591(-) (recR) [Haemophilus influenzae strain P669-6977]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCCGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACAGTGGAGGGCGATGCGACGGCAAACTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTAGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment