Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CH639_RS02955 Genome accession   NZ_CP031678
Coordinates   584895..585497 (-) Length   200 a.a.
NCBI ID   WP_005641249.1    Uniprot ID   A0ABX3BRK5
Organism   Haemophilus influenzae strain P679-2791     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579895..590497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH639_RS02935 (CH639_02935) - 580259..581929 (+) 1671 WP_011272054.1 fructose-specific PTS transporter subunit EIIC -
  CH639_RS02945 (CH639_02945) secG 582474..582815 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  CH639_RS02950 (CH639_02950) - 582924..584879 (-) 1956 WP_084999898.1 DNA topoisomerase III -
  CH639_RS02955 (CH639_02955) recR 584895..585497 (-) 603 WP_005641249.1 recombination mediator RecR Machinery gene
  CH639_RS02960 (CH639_02960) - 585630..585959 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH639_RS02965 (CH639_02965) - 586111..586956 (-) 846 WP_084999896.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH639_RS02970 (CH639_02970) - 587033..589633 (-) 2601 WP_084999894.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22079.17 Da        Isoelectric Point: 6.2854

>NTDB_id=269546 CH639_RS02955 WP_005641249.1 584895..585497(-) (recR) [Haemophilus influenzae strain P679-2791]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLAQALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=269546 CH639_RS02955 WP_005641249.1 584895..585497(-) (recR) [Haemophilus influenzae strain P679-2791]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCAAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGCTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTATCGCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATCGCTGAAATG
TGCCGCCAGCACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTTGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment