Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CH639_RS01335 Genome accession   NZ_CP031678
Coordinates   264472..266331 (-) Length   619 a.a.
NCBI ID   WP_005689013.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P679-2791     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 259472..271331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH639_RS01325 (CH639_01325) lptD 260233..262581 (+) 2349 WP_005689018.1 LPS assembly protein LptD -
  CH639_RS01330 (CH639_01330) proS 262669..264387 (-) 1719 WP_005689016.1 proline--tRNA ligase -
  CH639_RS01335 (CH639_01335) recQ 264472..266331 (-) 1860 WP_005689013.1 DNA helicase RecQ Machinery gene
  CH639_RS01340 (CH639_01340) cyaY 266333..266638 (-) 306 WP_005655473.1 iron donor protein CyaY -
  CH639_RS01345 (CH639_01345) lptM 266736..266852 (+) 117 WP_005652274.1 LPS translocon maturation chaperone LptM -
  CH639_RS01350 (CH639_01350) lysA 266900..268147 (+) 1248 WP_011272198.1 diaminopimelate decarboxylase -
  CH639_RS01355 (CH639_01355) - 268353..268979 (+) 627 WP_084999975.1 response regulator -
  CH639_RS01360 (CH639_01360) - 269041..269481 (-) 441 WP_005648547.1 DUF2489 domain-containing protein -
  CH639_RS01365 (CH639_01365) yihI 269485..270045 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70089.54 Da        Isoelectric Point: 8.1652

>NTDB_id=269533 CH639_RS01335 WP_005689013.1 264472..266331(-) (recQ) [Haemophilus influenzae strain P679-2791]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQKDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISSISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=269533 CH639_RS01335 WP_005689013.1 264472..266331(-) (recQ) [Haemophilus influenzae strain P679-2791]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAAAAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATATATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTGTTGGCTCAAAAGGGTAAG
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAGCATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGT
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGCTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGGTGTTGCGTGGCATGCACAATCAGAAAATTATTGAACGCC
AACACCATAAACTTTCAGTATATGGCATTGGAAAAGATAAAAGCAAAGAGCATTGGCAGTCTGTTATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTTCAATCAGTAAAATTGCCCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCCTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCGACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

RQC domain (RQC)

(409-518)

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)

DEAD/DEAH box helicase (DEAD)

(32-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38

Multiple sequence alignment