Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CFF8240_RS05520 Genome accession   NC_008599
Coordinates   1117640..1118407 (-) Length   255 a.a.
NCBI ID   WP_002849743.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. fetus 82-40     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1112640..1123407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFF8240_RS05490 (CFF8240_1119) tatB 1112932..1113387 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  CFF8240_RS05495 (CFF8240_1120) tatC 1113387..1114142 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  CFF8240_RS05500 (CFF8240_1121) queA 1114139..1115158 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CFF8240_RS05505 (CFF8240_1123) - 1115168..1116412 (+) 1245 WP_011732089.1 hypothetical protein -
  CFF8240_RS05510 (CFF8240_1122) - 1116398..1117261 (-) 864 WP_002849738.1 SAM-dependent methyltransferase -
  CFF8240_RS05515 (CFF8240_1124) dprB 1117269..1117643 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  CFF8240_RS05520 (CFF8240_1125) dprA 1117640..1118407 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  CFF8240_RS05525 (CFF8240_1126) - 1118391..1119554 (-) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  CFF8240_RS05530 (CFF8240_1127) ilvC 1119555..1120577 (-) 1023 WP_011732091.1 ketol-acid reductoisomerase -
  CFF8240_RS05535 (CFF8240_1128) - 1120724..1121536 (+) 813 WP_011732092.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28365.52 Da        Isoelectric Point: 5.8689

>NTDB_id=26932 CFF8240_RS05520 WP_002849743.1 1117640..1118407(-) (dprA) [Campylobacter fetus subsp. fetus 82-40]
MDFITDILSLKKLKKPVNKLYYKGNLELLNFPKVAIVGSRKCTSYTKNIVLSLASTLKNYGICVVSGAAIGTDIHAHEGA
FPNTIAVFGNGLNNIYPAQNSKMIEKIYKDALALSEYEPNTFATPWSFLERNRIVVSLSDAVIIAEADIKSGSMSSARLA
LDMGIPLFVLPQRFNESNGTNDLLSKNRANLIADFDEFASKFGSLNSDLSKDDVLEFIKINQNFDECYARFGDALYEYEL
EGKISIDRVYIRILS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=26932 CFF8240_RS05520 WP_002849743.1 1117640..1118407(-) (dprA) [Campylobacter fetus subsp. fetus 82-40]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAAACTATACTATAAAGGAAATTTAGA
ACTCTTAAATTTCCCCAAAGTAGCGATAGTCGGCTCGAGAAAATGTACTTCTTATACAAAAAATATTGTTTTGAGTTTAG
CCTCTACTCTTAAAAATTACGGTATTTGCGTAGTTAGCGGAGCGGCTATAGGTACCGATATACATGCTCACGAAGGCGCT
TTTCCAAATACCATCGCAGTCTTTGGAAATGGACTTAATAATATATATCCGGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGACGCATTGGCTCTTAGCGAGTATGAACCTAATACTTTTGCGACTCCTTGGAGTTTTTTAGAAAGAAACAGAA
TAGTCGTATCTCTAAGCGACGCCGTGATCATAGCAGAAGCGGATATTAAAAGCGGATCAATGTCTAGCGCAAGACTCGCT
TTGGATATGGGAATTCCTCTTTTTGTATTGCCTCAAAGGTTTAATGAGAGCAATGGAACAAATGATCTACTTAGTAAAAA
TAGGGCGAATTTAATAGCCGATTTTGATGAGTTTGCTTCTAAATTCGGAAGTTTAAACAGTGATTTGAGTAAAGACGATG
TTTTGGAATTTATAAAAATAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATACGAGCTG
GAGGGTAAAATTTCTATAGACAGAGTATATATAAGGATTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.745

92.157

0.514
  dprA Helicobacter pylori 26695

47.917

94.118

0.451

Multiple sequence alignment