Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   C3F22_RS12930 Genome accession   NZ_CP026420
Coordinates   2644308..2646530 (+) Length   740 a.a.
NCBI ID   WP_104426675.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2639308..2651530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS12910 (C3F22_12920) lnt 2640125..2641684 (+) 1560 WP_104426672.1 apolipoprotein N-acyltransferase -
  C3F22_RS12915 (C3F22_12925) - 2641765..2642100 (-) 336 WP_104426673.1 hypothetical protein -
  C3F22_RS12920 (C3F22_12930) gspG 2642385..2642882 (-) 498 WP_104426674.1 type II secretion system major pseudopilin GspG -
  C3F22_RS12925 (C3F22_12935) gspF 2642953..2644158 (-) 1206 WP_004781737.1 type II secretion system inner membrane protein GspF -
  C3F22_RS12930 (C3F22_12940) priA 2644308..2646530 (+) 2223 WP_104426675.1 primosomal protein N' Machinery gene
  C3F22_RS12935 (C3F22_12945) - 2646605..2648410 (+) 1806 WP_104426676.1 cation:proton antiporter -
  C3F22_RS12940 (C3F22_12950) hslO 2648512..2649387 (+) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  C3F22_RS12945 (C3F22_12955) - 2649602..2650051 (+) 450 WP_104426677.1 DUF2147 domain-containing protein -
  C3F22_RS12950 (C3F22_12960) - 2650329..2650790 (+) 462 WP_004781732.1 DUF2147 domain-containing protein -
  C3F22_RS12955 (C3F22_12965) - 2650982..2651443 (+) 462 WP_004781731.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83818.84 Da        Isoelectric Point: 8.6437

>NTDB_id=269238 C3F22_RS12930 WP_104426675.1 2644308..2646530(+) (priA) [Acinetobacter sp. ACNIH1]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANAEQKHAIQQVLKYRKRYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERIAQLIIQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQVQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=269238 C3F22_RS12930 WP_104426675.1 2644308..2646530(+) (priA) [Acinetobacter sp. ACNIH1]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTAATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAAGCCATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCAAGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCCATTGGGGA
AGTGATCCAGACTGCCTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAAGTTCGCCGTTCCGAGAGGCAACAGGAAGCTTATCGGATTCTAAAACTGCATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGAATAGAAACAGCGACTTTAAAAGCACTCGAAAAAAAAGGGATTTGCGAATG
TGTACTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATGCGGAACAAAAGC
ATGCGATTCAGCAAGTGCTGAAATACCGCAAGCGATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGTGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTCAAACAGGGCAAGCAGGTGCTGGTACTGGTGCCTGAAATCGGACTGAC
GCCACAAACCATTAGCCGCTTTCAATCCCGCTTCCATTGTCATATCGCCCTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCGTCCATTGTACTTGGCACCCGTTCTGCGATTTATACACCGATG
CCGAATCTAGGCCTGATCATTCTGGATGAAGAGCATGACCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTACTCTTGGGTTCGGCAACACCCAGCATTGACAGTTATG
CACTGGTGCAGCAAGGTAAAATGCAGGTACTGGAACTGAATCAACGCGCGGGTACAGCGCTAATGCCGAAAATCCATATT
CTGGATTTAAAAGTAGCGCCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAGCGCCTGGCTAAAAA
AGAACAGGTACTCATTTTCCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGCAGTTGTGGCTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTACACCGGCAACCTTATCAGCATCTGCATTGTCATCATTGTGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGTTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTGATCCGGGTCGATCGTGACTCAACCAGCCGGGTCGGTAGTTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACGCAGATGCTCGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTCTGGATATCGATTCTGGTCTTCTCAGTGTCGATTTCCGGGCCACAGAACGTATAGCACAATT
GATCATACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGTGCCTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGTACAAAATACCGAATTCTTACAGAAACATGC
TGCTCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCTATTCCTGCTCCGATGGAACGCAAGGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAAGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(209-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.2

100

0.723

Multiple sequence alignment