Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   C3F22_RS11920 Genome accession   NZ_CP026420
Coordinates   2438470..2439270 (-) Length   266 a.a.
NCBI ID   WP_005232134.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2433470..2444270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS11900 (C3F22_11910) - 2434521..2435219 (-) 699 WP_005232125.1 YfgM family protein -
  C3F22_RS11905 (C3F22_11915) hisS 2435250..2436545 (-) 1296 WP_104426613.1 histidine--tRNA ligase -
  C3F22_RS11910 (C3F22_11920) ispG 2436549..2437670 (-) 1122 WP_005232130.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  C3F22_RS11915 (C3F22_11925) - 2437694..2438479 (-) 786 WP_034703520.1 helix-turn-helix domain-containing protein -
  C3F22_RS11920 (C3F22_11930) pilF 2438470..2439270 (-) 801 WP_005232134.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  C3F22_RS11925 (C3F22_11935) rlmN 2439285..2440520 (-) 1236 WP_104426614.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  C3F22_RS11930 (C3F22_11940) ndk 2440642..2441073 (-) 432 WP_004782097.1 nucleoside-diphosphate kinase -
  C3F22_RS11935 (C3F22_11945) iscX 2441183..2441383 (-) 201 WP_104426615.1 Fe-S cluster assembly protein IscX -
  C3F22_RS11940 (C3F22_11950) - 2441472..2442023 (-) 552 WP_104426616.1 phosphatase PAP2 family protein -
  C3F22_RS11945 (C3F22_11955) - 2442668..2443758 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29990.11 Da        Isoelectric Point: 9.0592

>NTDB_id=269234 C3F22_RS11920 WP_005232134.1 2438470..2439270(-) (pilF) [Acinetobacter sp. ACNIH1]
MSNLTSKLALVSVVCGSLVLTACQTPDLGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVL
LQQEGSKPNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDL
VNAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFVRGVGQKNQSARALWIGIRTARASGDQLGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=269234 C3F22_RS11920 WP_005232134.1 2438470..2439270(-) (pilF) [Acinetobacter sp. ACNIH1]
TTGAGTAATCTGACATCTAAACTTGCTTTGGTTTCAGTAGTATGTGGGTCTTTGGTTTTAACTGCGTGTCAAACGCCAGA
TCTGGGTCAGAAGGACCCGGAAAAAGCCACCAAGGTTCGTACTCAGTTGGCGGTTGAATATCTTAAAAACGGTGATCTGG
ATTCAGCTAAACGTGCGCTGGATCAGGCACTGGAAACTAATCCGCGTGATTCGCAAGCCAATATGATGATGGGCGTGCTG
CTTCAGCAGGAAGGCAGCAAACCTAATCTTGAAAAGGCCGAAGGTTATTTCAAGCGTGCAATTTCGGCAGATCCAAAAAA
TGCCCAGGCACGAAATAACTACGGCACCTATTTATATCAGCTTGAGCGCTATAAAGATGCGATCGAGCAGTTCGAAATTG
CCGGCGCAACTTTAGGTTATGACCAGCGATTTCGTGCCCTTGAAAATATGGGACGGATTTACCTGAAACAGGGTGATTTG
GTGAATGCTGAAAAATCATTCAAACAGGCACTACAGGCTAATCGCGCTTCGTATATATCAATGTTAGAGTTGGCAGAAAT
TTTTTATCTGAACCAGCAGTTCCCGGCCGCGACTCAAATGTATGAACAGTTTGTACGTGGCGTGGGGCAGAAAAACCAGA
GTGCCCGTGCGCTCTGGATTGGCATTCGCACTGCGCGTGCCAGTGGCGATCAGTTAGGCATGCAGGTATTGGTCAATCAA
TTACGTGCATTGTTCCCTGAAAGCCCGGAATACCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATGGAAGTA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(145-174)

Tetratricopeptide repeat (TPR_14)

(40-79)

Tetratricopeptide repeat (TPR_16)

(89-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

76.692

100

0.767
  pilF Acinetobacter baylyi ADP1

69.663

100

0.699

Multiple sequence alignment