Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   C3F22_RS01175 Genome accession   NZ_CP026420
Coordinates   216258..217115 (+) Length   285 a.a.
NCBI ID   WP_171284737.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211258..222115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS01150 (C3F22_01150) - 211529..212731 (+) 1203 WP_104425706.1 CsgG/HfaB family protein -
  C3F22_RS01155 (C3F22_01155) - 212818..213492 (+) 675 WP_104425707.1 hypothetical protein -
  C3F22_RS01160 (C3F22_01160) - 213776..214351 (-) 576 WP_004786836.1 xanthine phosphoribosyltransferase -
  C3F22_RS01165 (C3F22_01165) - 214442..215101 (-) 660 WP_373683638.1 DUF3108 domain-containing protein -
  C3F22_RS01170 (C3F22_01170) - 215309..215995 (-) 687 WP_004786832.1 hypothetical protein -
  C3F22_RS01175 (C3F22_01175) tonB2 216258..217115 (+) 858 WP_171284737.1 energy transducer TonB Machinery gene
  C3F22_RS01180 (C3F22_01180) - 217112..217513 (-) 402 WP_104425710.1 hypothetical protein -
  C3F22_RS01185 (C3F22_01185) - 217671..217970 (-) 300 Protein_224 antibiotic biosynthesis monooxygenase family protein -
  C3F22_RS01190 (C3F22_01190) ybeY 218062..218544 (-) 483 WP_104425711.1 rRNA maturation RNase YbeY -
  C3F22_RS01195 (C3F22_01195) - 218579..219655 (-) 1077 WP_104425712.1 PhoH family protein -
  C3F22_RS01200 (C3F22_01200) miaB 219694..221151 (-) 1458 WP_004786821.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32771.18 Da        Isoelectric Point: 6.1603

>NTDB_id=269217 C3F22_RS01175 WP_171284737.1 216258..217115(+) (tonB2) [Acinetobacter sp. ACNIH1]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHNLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=269217 C3F22_RS01175 WP_171284737.1 216258..217115(+) (tonB2) [Acinetobacter sp. ACNIH1]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCACGTAATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACCAAAGAAATTGCAGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAACAGCAAGAAAGTCCGGACATGTTGCAACAACAGCG
CGAATTAAGCTTTGAAGAAAAAGTACTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTTCAGGCCAAAGCCGCTATGGTAGCCAGTCTGGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGCATCCAGTCCAAACAGGATGTTTCTGCAGCTTATCTGGA
AAAATTCCGTCAGAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGCTTGATGGTGATCTTGAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGGCATAATTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCAGCACCATTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGCT
GAGAATTATTCGAACCTGGCGCTTTGATCCGGCTGAAGCAGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.835

97.895

0.723

Multiple sequence alignment