Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C3F34_RS05810 Genome accession   NZ_CP026412
Coordinates   1242824..1243978 (+) Length   384 a.a.
NCBI ID   WP_044739597.1    Uniprot ID   A0A2L0HTJ1
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237824..1248978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS05795 (C3F34_05795) - 1239543..1241585 (-) 2043 WP_104441231.1 TonB-dependent copper receptor -
  C3F34_RS05800 (C3F34_05800) - 1241653..1242081 (-) 429 WP_104441232.1 DUF2946 family protein -
  C3F34_RS05805 (C3F34_05805) def 1242171..1242704 (-) 534 WP_044739598.1 peptide deformylase -
  C3F34_RS05810 (C3F34_05810) tsaP 1242824..1243978 (+) 1155 WP_044739597.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C3F34_RS05815 (C3F34_05815) dprA 1243991..1245136 (+) 1146 WP_044739596.1 DNA-processing protein DprA Machinery gene
  C3F34_RS05820 (C3F34_05820) - 1245175..1245744 (+) 570 WP_104441233.1 L-threonylcarbamoyladenylate synthase -
  C3F34_RS05825 (C3F34_05825) - 1246136..1247065 (-) 930 WP_228155332.1 DMT family transporter -
  C3F34_RS05830 (C3F34_05830) - 1247201..1247959 (+) 759 WP_104441234.1 AraC family transcriptional regulator -
  C3F34_RS05835 (C3F34_05835) - 1248066..1248611 (+) 546 WP_016165593.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42021.15 Da        Isoelectric Point: 7.4252

>NTDB_id=269177 C3F34_RS05810 WP_044739597.1 1242824..1243978(+) (tsaP) [Acinetobacter sp. ACNIH2]
MKKVLKGMPSFSALGFKQQLLALTVGLAISVGSIAVVEAAPARNVNPPSLKAGAPQVYVVKKGDTLWDISGKFLDKPWRW
PEIWASNRHVKNPHWIFPGDKLLLCSYQGKPLIGKDEGDGCDGIIRRYAGGTKLQPQVRVESLNDAIPVIPLDNIKQWLE
HSTIVAPESVENTPYVLGTADQRVLAAKGQTIYARGNGLEVGQQYAVYREGDPYTLSNEKGKKYNAGLELNQVATGIAVA
SENDITTLELTDSFNAEVRRGDRVLPVYDPMLPTLFYPTMAEDVTAGGQIVRVMGSIGTAAQHSVVTIDRGSFEGVQVGH
IFSINQKGEQVRDPKTKEMVQLPGQKIGNLMVFRTFDHFSYGYVLDSSLPIKIGAYIQPPLMDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=269177 C3F34_RS05810 WP_044739597.1 1242824..1243978(+) (tsaP) [Acinetobacter sp. ACNIH2]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAACAGCAATTGTTGGCACTGACTGTCGGTTT
GGCGATCAGTGTTGGTTCTATCGCAGTGGTTGAAGCTGCACCAGCTCGTAATGTTAATCCACCTTCATTAAAAGCGGGTG
CTCCACAAGTTTATGTAGTGAAAAAGGGTGACACCCTCTGGGATATCTCGGGGAAATTTTTAGATAAACCTTGGCGCTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTGAAAAATCCACACTGGATTTTCCCTGGCGATAAACTTTTACTTTGTAGCTA
TCAAGGCAAACCCCTGATAGGTAAAGATGAAGGTGATGGCTGTGACGGTATTATCCGTCGTTATGCTGGCGGCACCAAAC
TACAACCTCAGGTCCGCGTCGAATCCTTAAATGATGCTATTCCTGTAATTCCATTGGACAATATTAAACAATGGTTAGAA
CATTCAACGATTGTTGCTCCTGAGTCAGTAGAAAATACACCTTATGTACTAGGTACTGCTGATCAACGCGTATTGGCAGC
CAAAGGGCAAACCATCTATGCGCGTGGCAATGGCTTAGAAGTTGGCCAGCAATATGCAGTTTATCGCGAAGGTGACCCGT
ACACCCTCAGCAATGAAAAAGGCAAAAAGTATAATGCTGGACTTGAGCTGAATCAGGTGGCGACGGGCATAGCTGTTGCA
AGTGAAAATGACATTACAACACTGGAACTCACAGATAGCTTTAATGCCGAAGTACGTCGTGGTGACCGTGTACTCCCTGT
TTATGACCCAATGTTGCCTACCCTGTTCTATCCAACCATGGCTGAAGATGTAACGGCTGGAGGACAAATTGTTCGCGTGA
TGGGTTCTATTGGTACGGCTGCCCAACACAGCGTCGTGACCATAGACCGCGGTAGTTTTGAGGGCGTGCAAGTGGGCCAC
ATATTTAGCATCAACCAAAAAGGTGAACAGGTTCGAGACCCGAAAACCAAAGAAATGGTGCAATTGCCTGGACAAAAAAT
TGGTAACTTAATGGTGTTCAGAACTTTTGATCACTTTAGCTATGGCTATGTGCTTGACAGTTCCTTACCTATCAAAATCG
GTGCTTATATTCAACCACCATTAATGGATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0HTJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685

Multiple sequence alignment