Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   C3F34_RS05410 Genome accession   NZ_CP026412
Coordinates   1155449..1155775 (-) Length   108 a.a.
NCBI ID   WP_016168455.1    Uniprot ID   R9AQ65
Organism   Acinetobacter sp. ACNIH2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150449..1160775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS05390 (C3F34_05390) - 1150672..1151343 (-) 672 WP_044738805.1 FHA domain-containing protein -
  C3F34_RS05395 (C3F34_05395) gspD 1151415..1153670 (-) 2256 WP_104441205.1 type II secretion system secretin GspD -
  C3F34_RS05400 (C3F34_05400) - 1153713..1154540 (-) 828 WP_044738803.1 type II secretion system protein N -
  C3F34_RS05405 (C3F34_05405) gspN 1154540..1155283 (-) 744 WP_104441206.1 type II secretion system protein N -
  C3F34_RS05410 (C3F34_05410) hns 1155449..1155775 (-) 327 WP_016168455.1 H-NS family nucleoid-associated regulatory protein Regulator
  C3F34_RS05415 (C3F34_05415) - 1155926..1156354 (-) 429 WP_016168456.1 acyl-CoA thioesterase -
  C3F34_RS05420 (C3F34_05420) - 1156363..1157556 (-) 1194 WP_104441207.1 heme biosynthesis protein HemY -
  C3F34_RS05425 (C3F34_05425) - 1157558..1158409 (-) 852 WP_104441208.1 hypothetical protein -
  C3F34_RS05430 (C3F34_05430) - 1158406..1159185 (-) 780 WP_044738798.1 uroporphyrinogen-III synthase -
  C3F34_RS05435 (C3F34_05435) hemC 1159189..1160106 (-) 918 WP_026441111.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12324.16 Da        Isoelectric Point: 6.4258

>NTDB_id=269172 C3F34_RS05410 WP_016168455.1 1155449..1155775(-) (hns) [Acinetobacter sp. ACNIH2]
MMPDISNLSVEELKRLQVEAEALIVSKKDQAIEDAYTQIMDIADKVGLSIEQILEFGATKRKKTTRKSVEPRYRNKSDAS
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=269172 C3F34_RS05410 WP_016168455.1 1155449..1155775(-) (hns) [Acinetobacter sp. ACNIH2]
ATGATGCCAGACATTAGTAATTTATCTGTAGAAGAGTTAAAGCGTTTACAAGTAGAAGCGGAAGCCTTAATCGTTTCTAA
AAAAGATCAGGCAATTGAAGATGCATATACTCAGATTATGGATATTGCTGATAAAGTGGGTTTGAGTATTGAGCAAATCT
TAGAGTTTGGCGCAACTAAACGTAAGAAAACGACTCGTAAATCTGTAGAACCACGTTATCGCAATAAATCAGATGCATCA
GAAACTTGGACAGGCCGTGGTAAACAACCTCGCTGGCTAGTGGCTGAATTGGAAAAAGGTGCAAAACTTGAAGATTTTCT
TATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9AQ65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment