Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C3F36_RS08270 Genome accession   NZ_CP026406
Coordinates   1774504..1775943 (-) Length   479 a.a.
NCBI ID   WP_041211850.1    Uniprot ID   A0A2L0TRY9
Organism   Aeromonas sp. ASNIH2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1769504..1780943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F36_RS08240 (C3F36_08240) - 1769783..1770523 (+) 741 WP_104454885.1 KDGP aldolase family protein -
  C3F36_RS08245 (C3F36_08245) - 1770627..1772531 (+) 1905 WP_104454886.1 HTH domain-containing protein -
  C3F36_RS08250 (C3F36_08250) npr 1772547..1772819 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  C3F36_RS08255 (C3F36_08255) rapZ 1772840..1773706 (-) 867 WP_010675869.1 RNase adapter RapZ -
  C3F36_RS08260 (C3F36_08260) ptsN 1773747..1774193 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  C3F36_RS08265 (C3F36_08265) hpf 1774196..1774483 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  C3F36_RS08270 (C3F36_08270) rpoN/rpoN1 1774504..1775943 (-) 1440 WP_041211850.1 RNA polymerase factor sigma-54 Machinery gene
  C3F36_RS08275 (C3F36_08275) lptB 1776009..1776734 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  C3F36_RS08280 (C3F36_08280) lptA 1776747..1777265 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  C3F36_RS08285 (C3F36_08285) lptC 1777252..1777812 (-) 561 WP_104454887.1 LPS export ABC transporter periplasmic protein LptC -
  C3F36_RS08290 (C3F36_08290) kdsC 1777809..1778363 (-) 555 WP_104454888.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  C3F36_RS08295 (C3F36_08295) - 1778363..1779358 (-) 996 WP_042880205.1 KpsF/GutQ family sugar-phosphate isomerase -
  C3F36_RS08300 (C3F36_08300) mlaF 1779565..1780365 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53731.54 Da        Isoelectric Point: 4.3728

>NTDB_id=269144 C3F36_RS08270 WP_041211850.1 1774504..1775943(-) (rpoN/rpoN1) [Aeromonas sp. ASNIH2]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQAETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=269144 C3F36_RS08270 WP_041211850.1 1774504..1775943(-) (rpoN/rpoN1) [Aeromonas sp. ASNIH2]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGGCAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCAGACCTGCCCT
GGCTCGATGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGTATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment