Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C3F39_RS05270 Genome accession   NZ_CP026392
Coordinates   972986..973582 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KPNIH48     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 967986..978582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F39_RS05255 (C3F39_05260) helD 968194..970248 (-) 2055 WP_040236859.1 DNA helicase IV -
  C3F39_RS05260 (C3F39_05265) - 970373..970819 (+) 447 WP_002898425.1 YccF domain-containing protein -
  C3F39_RS05265 (C3F39_05270) yccS 970837..972972 (+) 2136 WP_002898422.1 YccS family putative transporter -
  C3F39_RS05270 (C3F39_05275) sxy/tfoX 972986..973582 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  C3F39_RS05275 (C3F39_05280) - 973673..973888 (+) 216 WP_009485781.1 hypothetical protein -
  C3F39_RS05280 (C3F39_05285) sulA 973931..974440 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  C3F39_RS05285 (C3F39_05290) ompA 974793..975863 (+) 1071 WP_002898408.1 porin OmpA -
  C3F39_RS05290 (C3F39_05295) matP 975996..976448 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  C3F39_RS05295 (C3F39_05300) - 976634..978391 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=269088 C3F39_RS05270 WP_004179217.1 972986..973582(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPNIH48]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=269088 C3F39_RS05270 WP_004179217.1 972986..973582(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPNIH48]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment