Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C3F35_RS03700 Genome accession   NZ_CP026387
Coordinates   742361..742987 (-) Length   208 a.a.
NCBI ID   WP_059308343.1    Uniprot ID   A0A9X3YCJ6
Organism   Leclercia sp. LSNIH3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 737361..747987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F35_RS03685 (C3F35_03685) helD 737598..739652 (-) 2055 WP_103792016.1 DNA helicase IV -
  C3F35_RS03690 (C3F35_03690) - 739776..740222 (+) 447 WP_032617407.1 YccF domain-containing protein -
  C3F35_RS03695 (C3F35_03695) yccS 740241..742376 (+) 2136 WP_103792015.1 YccS family putative transporter -
  C3F35_RS03700 (C3F35_03700) sxy/tfoX 742361..742987 (-) 627 WP_059308343.1 TfoX/Sxy family DNA transformation protein Regulator
  C3F35_RS03705 (C3F35_03705) sulA 743205..743714 (+) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  C3F35_RS03710 (C3F35_03710) ompA 744069..745124 (+) 1056 WP_103792031.1 porin OmpA -
  C3F35_RS03715 (C3F35_03715) matP 745191..745646 (-) 456 WP_032617400.1 macrodomain Ter protein MatP -
  C3F35_RS03720 (C3F35_03720) - 745833..747593 (+) 1761 WP_103792014.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23878.43 Da        Isoelectric Point: 9.1279

>NTDB_id=269066 C3F35_RS03700 WP_059308343.1 742361..742987(-) (sxy/tfoX) [Leclercia sp. LSNIH3]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPELRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=269066 C3F35_RS03700 WP_059308343.1 742361..742987(-) (sxy/tfoX) [Leclercia sp. LSNIH3]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACCTCTTATCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCACTTGAAGCCGCGCG
GCGGGAACGTCGCGAGCGGTACAAACGCGACAGGCTGAAAGATTTACCCAATCTCAATTTTCAGCTTGAGATTCTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTAAAGATCAGAGCGCTTAAC
AAGCACCTGAGTTACAAAGTGCTGTTTGCGCTAGAGGGGGCAATAGTGGGGCTGCATGAAGCAGCGCTCCCGGAGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTACCGGTAGAGAACAGTCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567

Multiple sequence alignment