Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3F42_RS13185 Genome accession   NZ_CP026386
Coordinates   2844379..2845746 (-) Length   455 a.a.
NCBI ID   WP_094010333.1    Uniprot ID   -
Organism   Pseudomonas sp. PONIH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2839379..2850746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F42_RS13165 (C3F42_13165) - 2840582..2841391 (+) 810 WP_158659567.1 lytic polysaccharide monooxygenase -
  C3F42_RS13170 (C3F42_13170) - 2841463..2841834 (+) 372 WP_104444528.1 PilZ domain-containing protein -
  C3F42_RS13175 (C3F42_13175) - 2842096..2843613 (+) 1518 WP_023630301.1 nucleobase:cation symporter-2 family protein -
  C3F42_RS29880 - 2843803..2844084 (-) 282 WP_232888034.1 sigma-70 family RNA polymerase sigma factor -
  C3F42_RS29885 - 2844090..2844311 (-) 222 WP_256586298.1 RNA polymerase sigma factor -
  C3F42_RS13185 (C3F42_13185) radA 2844379..2845746 (-) 1368 WP_094010333.1 DNA repair protein RadA Machinery gene
  C3F42_RS13190 (C3F42_13190) mscL 2845925..2846338 (+) 414 WP_023630299.1 large-conductance mechanosensitive channel protein MscL -
  C3F42_RS13195 (C3F42_13195) - 2846407..2847183 (-) 777 WP_094010334.1 ferredoxin--NADP reductase -
  C3F42_RS13200 (C3F42_13200) - 2847397..2848101 (+) 705 WP_104444529.1 autoinducer binding domain-containing protein -
  C3F42_RS13205 (C3F42_13205) - 2848200..2849324 (+) 1125 WP_104444530.1 methyltransferase -
  C3F42_RS13210 (C3F42_13210) - 2849380..2849520 (-) 141 WP_023630574.1 DUF2474 domain-containing protein -
  C3F42_RS13215 (C3F42_13215) cydB 2849533..2850540 (-) 1008 WP_023630573.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48740.15 Da        Isoelectric Point: 6.8985

>NTDB_id=269048 C3F42_RS13185 WP_094010333.1 2844379..2845746(-) (radA) [Pseudomonas sp. PONIH3]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVESMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=269048 C3F42_RS13185 WP_094010333.1 2844379..2845746(-) (radA) [Pseudomonas sp. PONIH3]
ATGGCCAAGGCCAAGCGTTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGGCAGTGTGGCGAGTG
CGGGGCCTGGAACACCCTGGTCGAGAGCATGATCGAAAGCGGCGGCGCCGCGGCACCGAGCGGGCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTGAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAACTC
GACCGTGTACTCGGCGGCGGCCTGGTGGATGGTTCGGTGGTACTGATCGGGGGCGATCCGGGTATCGGCAAATCGACCAT
CCTTCTGCAGACCCTATGCAACATCGCCGTGCAGATGCCGGCGCTGTATGTCACCGGCGAGGAATCGCAGCAGCAGGTAG
CCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTCATGACTGAAACCTGCATCGAGACCATCATTGCC
ACCGCGCGCCAGGAAAAGCCGCGGGTGATGGTGATCGACTCGATACAGACCATCTTCACCGAACAACTGCAGTCGGCGCC
GGGCGGCGTCGCCCAGGTGCGCGAGAGCACGGCATTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCACGTCACCAAGGAGGGCTCGTTGGCAGGTCCTCGGGTGCTCGAGCACATGGTCGACACGGTGTTGTATTTCGAG
GGTGAGTCCGATGGCCGCCTGCGCCTGCTGCGCGCAGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACCGCGGCCTCAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTCAATCGCACCCAGGAAGAGGTGCCCGGCA
GCGTGGTCATGGCCACCTGGGAGGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGTTGGTTGACGACAGCCACCTGGCC
AATCCGCGACGGGTGACGTTAGGCCTGGACCAGAACCGCCTGGCCATGCTGTTGGCGGTGTTGCATCGACACGGCGGCAT
CCCCACCCATGATCAGGACGTGTTCCTCAACGTCGTCGGTGGTGTGAAGGTGCTTGAGACTGCCTCCGACCTGGCGTTGC
TGGCTGCGGTGATGTCGAGCCTGCGCAATCGTCCGCTGGCCCATGGCCTGCTGGTGTTCGGCGAAATCGGCCTGTCGGGC
GAGGTACGCCCGGTACCCAGTGGCCAGGAGCGTTTGAAGGAAGCGGCAAAACATGGCTTCAAGCGTGCCATCGTGCCTAA
GGGCAACGCGCCGAAAGAGGCGCCCGCCGGGTTGCAGGTGATTGCCGTGACCCGTCTGGAACAGGCACTGGACGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462

Multiple sequence alignment