Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NT01CX_RS01100 Genome accession   NC_008593
Coordinates   207599..208960 (+) Length   453 a.a.
NCBI ID   WP_011721192.1    Uniprot ID   A0A0A0I3A7
Organism   Clostridium novyi NT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202599..213960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT01CX_RS01080 (NT01CX_1084) - 202869..203327 (+) 459 WP_011721188.1 CtsR family transcriptional regulator -
  NT01CX_RS01085 (NT01CX_1085) - 203395..203919 (+) 525 WP_011721189.1 UvrB/UvrC motif-containing protein -
  NT01CX_RS01090 (NT01CX_1086) - 203931..204965 (+) 1035 WP_011721190.1 protein arginine kinase -
  NT01CX_RS01095 (NT01CX_1087) - 204994..207435 (+) 2442 WP_011721191.1 ATP-dependent Clp protease ATP-binding subunit -
  NT01CX_RS01100 (NT01CX_1088) radA 207599..208960 (+) 1362 WP_011721192.1 DNA repair protein RadA Machinery gene
  NT01CX_RS01105 (NT01CX_1089) disA 208992..210059 (+) 1068 WP_011721193.1 DNA integrity scanning diadenylate cyclase DisA -
  NT01CX_RS01110 (NT01CX_1090) - 210096..210497 (-) 402 WP_011721194.1 hypothetical protein -
  NT01CX_RS01115 (NT01CX_1091) - 210803..211882 (+) 1080 WP_011721195.1 PIN/TRAM domain-containing protein -
  NT01CX_RS01120 (NT01CX_1092) ispD 211905..212600 (+) 696 WP_011721196.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49923.87 Da        Isoelectric Point: 7.8756

>NTDB_id=26899 NT01CX_RS01100 WP_011721192.1 207599..208960(+) (radA) [Clostridium novyi NT]
MAKNKSVFVCQECGYEAPKWFGKCPGCNTWNSMVEEKKMDTVKSKRVGITQNNSKPESILNIKSGEFNRYDTGIGELNRV
LGGGLVKGSLTLISGAPGIGKSTILLQTANNIATKIGKVLYVSGEESGEQIKIRGDRIGNISSELYILSETNLEIIEEHI
NSMNPVFVIIDSIQTLFKPSIESAPGSVSQVRECSNELMRIAKTKNIPLFIVAHVTKQGELAGPRVLEHMVDTVLSFEGE
RTQEFRILRTLKNRFGTTSEIGVFEMREEGLREIFNPSEVFLEETNFNAEGSIVIGVMEGTRPILVEIQALVTETKAIMP
RRTAVGVDNARLNLILAVLEKKLKIPFYNCDVYVNVVGGIDIEGTYGDLGLALALVSSIKSREFKLNKMIVFGEIGLTGE
VRPISLCDRLVNEGIKMGFENIVIPTRNKDKITTKNKNIIGVSSLKEAISKVF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=26899 NT01CX_RS01100 WP_011721192.1 207599..208960(+) (radA) [Clostridium novyi NT]
ATGGCTAAGAATAAAAGCGTATTTGTATGCCAAGAATGTGGATATGAGGCTCCTAAATGGTTTGGAAAATGTCCTGGTTG
TAACACATGGAATAGTATGGTTGAAGAAAAGAAAATGGATACTGTAAAAAGTAAAAGGGTTGGAATAACTCAAAATAACA
GTAAGCCAGAGAGTATACTAAACATAAAATCAGGAGAATTTAATAGATATGATACTGGTATTGGAGAACTTAATAGGGTT
TTAGGTGGAGGACTTGTTAAGGGTTCTTTAACATTAATATCAGGGGCTCCCGGTATAGGGAAGTCAACAATACTTCTTCA
AACAGCAAACAACATTGCTACAAAAATAGGAAAAGTATTATATGTATCAGGAGAAGAGTCCGGTGAACAGATAAAAATAA
GAGGTGACAGAATAGGAAATATATCCTCTGAACTTTATATATTATCTGAAACTAATTTAGAAATAATAGAAGAACATATT
AATTCAATGAATCCAGTATTTGTTATAATAGATTCTATACAGACATTGTTTAAACCGTCTATTGAGTCAGCACCAGGAAG
TGTATCTCAAGTTAGAGAGTGTTCTAATGAACTTATGAGAATAGCAAAAACTAAAAATATACCATTATTTATAGTTGCCC
ATGTAACAAAGCAGGGAGAACTTGCAGGACCTAGAGTATTAGAGCATATGGTAGATACAGTTTTATCATTTGAAGGTGAA
AGAACTCAAGAATTTAGAATATTAAGGACATTAAAAAATAGATTTGGAACTACAAGCGAAATTGGTGTTTTTGAAATGAG
AGAAGAAGGGCTTCGAGAAATCTTTAATCCTTCTGAAGTATTTTTAGAAGAAACTAATTTTAATGCAGAAGGTTCAATAG
TTATAGGTGTAATGGAAGGAACTAGACCTATATTAGTAGAAATACAAGCATTAGTTACAGAAACTAAGGCAATTATGCCA
AGAAGAACAGCAGTGGGTGTTGATAATGCTAGATTAAATCTTATATTAGCTGTTTTAGAGAAAAAGCTAAAAATTCCTTT
TTATAATTGTGATGTTTATGTAAATGTAGTTGGAGGAATTGACATAGAGGGTACTTATGGAGATTTAGGACTTGCACTTG
CATTAGTTTCAAGTATAAAAAGTAGAGAATTTAAGTTAAATAAGATGATTGTTTTTGGAGAAATTGGGTTAACAGGAGAA
GTAAGACCTATTTCATTATGCGATAGACTTGTTAATGAAGGCATAAAAATGGGATTTGAGAATATTGTTATACCAACTAG
AAATAAAGATAAAATAACAACAAAAAATAAAAATATAATTGGTGTTTCATCATTAAAAGAGGCTATATCAAAAGTATTTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-219)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A0I3A7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.524

100

0.536
  radA Streptococcus mitis NCTC 12261

50.881

100

0.51
  radA Streptococcus pneumoniae Rx1

50.881

100

0.51
  radA Streptococcus pneumoniae D39

50.881

100

0.51
  radA Streptococcus pneumoniae R6

50.881

100

0.51
  radA Streptococcus pneumoniae TIGR4

50.881

100

0.51
  radA Streptococcus mitis SK321

50.661

100

0.508

Multiple sequence alignment