Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DZ899_RS22645 Genome accession   NZ_CP031660
Coordinates   4754660..4755157 (+) Length   165 a.a.
NCBI ID   WP_117341309.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PABL017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4749660..4760157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ899_RS22620 (DZ899_22620) - 4749828..4750931 (-) 1104 WP_117341305.1 patatin-like phospholipase family protein -
  DZ899_RS22625 (DZ899_22625) - 4751177..4751506 (+) 330 WP_023094888.1 hypothetical protein -
  DZ899_RS22630 (DZ899_22630) - 4751599..4752567 (+) 969 WP_117341306.1 DUF932 domain-containing protein -
  DZ899_RS22635 (DZ899_22635) - 4752643..4753647 (+) 1005 WP_117341307.1 lambda-exonuclease family protein -
  DZ899_RS22640 (DZ899_22640) - 4753738..4754688 (+) 951 WP_117341308.1 hydrolase or metal-binding protein -
  DZ899_RS22645 (DZ899_22645) ysxA/radC 4754660..4755157 (+) 498 WP_117341309.1 DNA repair protein RadC Machinery gene
  DZ899_RS22650 (DZ899_22650) - 4755171..4755380 (+) 210 WP_117341310.1 hypothetical protein -
  DZ899_RS22655 (DZ899_22655) - 4755441..4755746 (+) 306 WP_117341311.1 hypothetical protein -
  DZ899_RS22660 (DZ899_22660) - 4755733..4756080 (-) 348 WP_117341312.1 helix-turn-helix transcriptional regulator -
  DZ899_RS22665 (DZ899_22665) - 4756212..4756565 (+) 354 WP_042929653.1 hypothetical protein -
  DZ899_RS22670 (DZ899_22670) - 4756693..4757481 (+) 789 WP_117341313.1 hypothetical protein -
  DZ899_RS22675 (DZ899_22675) - 4757790..4758974 (-) 1185 WP_117341314.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18094.71 Da        Isoelectric Point: 6.2668

>NTDB_id=268939 DZ899_RS22645 WP_117341309.1 4754660..4755157(+) (ysxA/radC) [Pseudomonas aeruginosa strain PABL017]
MRLHKLKASESTGIYLVESPVTETDILLMAQQLANLPLRQGRALTSPKEVFSHLQALLGDYEHEVFALLLLDSGHRVIVF
HELFRGTLDSASVYPREVVKAALEHNAAATVLVHNHASGDPEPSQADLTLTHKLREALNLVGVRPLDHIVVGHEGCVSLA
EQGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=268939 DZ899_RS22645 WP_117341309.1 4754660..4755157(+) (ysxA/radC) [Pseudomonas aeruginosa strain PABL017]
ATGCGCCTGCACAAGCTGAAGGCCAGTGAATCGACCGGCATCTACCTGGTCGAGTCGCCGGTCACTGAAACCGACATCCT
GCTGATGGCCCAGCAGTTGGCGAATCTGCCTCTGCGTCAGGGGCGAGCACTGACCTCACCGAAGGAAGTGTTCAGCCACC
TGCAGGCGCTGCTGGGCGATTACGAGCATGAGGTATTCGCCCTGCTTCTGCTCGACAGCGGGCACCGGGTGATCGTCTTT
CACGAACTGTTCCGGGGCACCCTGGACAGCGCCAGCGTCTATCCCCGGGAAGTCGTCAAAGCTGCCCTTGAGCACAACGC
CGCGGCAACCGTACTGGTCCACAACCACGCTTCAGGTGATCCGGAACCCAGCCAAGCGGATCTCACCCTGACCCACAAAC
TGCGGGAGGCCCTGAACCTGGTCGGGGTACGCCCCCTGGACCATATCGTGGTGGGCCACGAGGGCTGCGTATCGCTGGCG
GAACAGGGCTACCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.805

99.394

0.376