Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BA6348_RS17370 Genome accession   NZ_CP026363
Coordinates   3545928..3547652 (-) Length   574 a.a.
NCBI ID   WP_005827302.1    Uniprot ID   A0A9X7T7A2
Organism   Brevibacillus agri strain DSM 6348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3540928..3552652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA6348_RS17350 (BA6348_17345) - 3540929..3541612 (-) 684 WP_122953128.1 restriction endonuclease -
  BA6348_RS17355 (BA6348_17350) - 3541634..3542299 (-) 666 WP_007785582.1 MBL fold metallo-hydrolase -
  BA6348_RS17360 (BA6348_17355) spo0A 3543285..3544073 (-) 789 WP_005827306.1 sporulation transcription factor Spo0A -
  BA6348_RS17365 (BA6348_17360) spoIVB 3544430..3545764 (-) 1335 WP_122953127.1 SpoIVB peptidase -
  BA6348_RS17370 (BA6348_17365) recN 3545928..3547652 (-) 1725 WP_005827302.1 DNA repair protein RecN Machinery gene
  BA6348_RS17375 (BA6348_17370) argR 3547669..3548118 (-) 450 WP_122953126.1 transcriptional regulator ArgR -
  BA6348_RS17380 (BA6348_17375) - 3548124..3548981 (-) 858 WP_005827300.1 NAD(+)/NADH kinase -
  BA6348_RS17385 (BA6348_17380) - 3549095..3549913 (-) 819 WP_005827298.1 TlyA family RNA methyltransferase -
  BA6348_RS17390 (BA6348_17385) dxs 3549910..3551796 (-) 1887 WP_026557065.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64736.99 Da        Isoelectric Point: 5.0475

>NTDB_id=268903 BA6348_RS17370 WP_005827302.1 3545928..3547652(-) (recN) [Brevibacillus agri strain DSM 6348]
MLVELSIRNFAIIKSVTVSFQRGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEQRAEVEGLFELPPGHPALAVC
ANVGVQVEQDGMLVVRRDISNQGKSIIRLNGQMVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGEAALGAAK
EEYGKLYAAYRKTKQDLERMARNERELVQRIDLLQYQLDEIEAAALSPGEDEKLMQQRKKWMNIEKVYATVQDAYRSLHG
DQKGMDWLGHAMSELERGVLYEEQLAPILETVQTAYYQIEDVVHKLRQLSYHLDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATISDELDEMHHYEDRLQQVEKRLQELAADLAVEALELSVIRQECATKLAREIEQQLKELHMERARFAIDVR
QTPDEEGVEIEGIKRHVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAQKRQVLCITHLPQVASMADAHFLIKKEMSEHETKTVVTRLSEEERVTELARMLSGAEVTAKTEEHA
REMIVLGRERKAVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=268903 BA6348_RS17370 WP_005827302.1 3545928..3547652(-) (recN) [Brevibacillus agri strain DSM 6348]
ATGCTAGTGGAACTCTCTATCCGTAATTTTGCCATCATTAAATCGGTCACTGTCTCTTTTCAGCGCGGGCTGAATATCCT
CACAGGGGAGACGGGGGCCGGAAAATCCATCATTATCGACGCGCTCGGGCTGCTTCTGGGCGGTCGCGCCTCCGCAGATT
TTGTCCGCTATGGCGAACAGCGCGCAGAGGTGGAAGGGCTGTTTGAACTGCCGCCTGGCCATCCGGCGCTCGCGGTGTGT
GCCAACGTCGGCGTACAAGTCGAGCAAGATGGCATGCTCGTCGTCCGCCGCGACATTTCCAACCAGGGCAAAAGCATCAT
TCGCCTGAACGGGCAGATGGTGACGCTTGCCATGCTGCGCGAGCTGGGACCGTGGCTGGTCACGGTGCACGGACAGCACG
ACACGCACATGCTGATGCAGGCGGACAAGCATATCAACTGGCTCGACGCCTACGGCGAGGCCGCGCTCGGAGCGGCGAAA
GAGGAGTACGGCAAGCTGTACGCCGCGTACCGGAAAACGAAGCAGGACCTCGAACGGATGGCCCGCAACGAGCGCGAGCT
GGTGCAGCGCATTGACCTTTTGCAATACCAGTTGGACGAGATCGAAGCGGCTGCGCTTTCGCCGGGCGAGGACGAAAAGC
TGATGCAGCAGCGCAAAAAGTGGATGAACATTGAGAAGGTTTACGCGACCGTCCAGGATGCGTACCGCTCGCTGCACGGC
GATCAAAAAGGCATGGACTGGCTCGGACATGCGATGAGCGAGCTGGAGCGCGGGGTGCTGTACGAGGAGCAGTTGGCTCC
GATTCTCGAGACGGTGCAGACGGCGTACTACCAGATTGAAGACGTCGTGCACAAGCTGCGCCAGCTCTCCTACCACCTCG
ACTTTGAGCCGGAGCAGCTCGCGGAAGTGGAGCGCAGGCTCGATCAGATCCAGTCCTTGAAGCGCAAGTACGGAAAAAGC
GTGGACGACATTTTGGAGTACGCGGCAACGATTTCCGACGAGCTGGACGAGATGCACCATTACGAAGATCGGCTGCAACA
GGTGGAAAAGCGGCTGCAAGAGCTGGCAGCAGACTTGGCCGTAGAGGCGCTGGAGCTGTCCGTCATTCGCCAGGAGTGTG
CGACGAAGCTCGCCCGCGAGATCGAGCAGCAGCTAAAAGAGCTGCACATGGAACGGGCGCGCTTCGCCATTGACGTGCGC
CAGACCCCTGACGAGGAAGGGGTAGAAATCGAAGGGATCAAGCGGCACGTCGACGCGAACGGCATGGACCAGATCGAGTT
TTTGATCTCCCCGAACCCGGGCGAGCCATTGCGCCCGCTGGCAAAGATCGCTTCCGGCGGGGAGCTGTCGCGGGTGATGC
TGGCGATCAAAACGATTCTCGCCGGAACCGATCAGGTGGAGACGCTGATTTTTGACGAGGTCGACACAGGGGTAAGCGGA
AGAGCGGCGCAGGCGATTGCCGAAAAGCTGGCCCGAGTCGCCCAGAAGCGGCAAGTATTGTGCATTACGCACTTGCCGCA
AGTAGCATCCATGGCCGATGCTCATTTTCTCATTAAAAAGGAAATGAGCGAGCACGAGACGAAAACGGTCGTGACGAGGC
TCTCGGAGGAGGAGCGGGTGACCGAGCTTGCCCGCATGCTCAGCGGGGCGGAAGTAACGGCGAAAACAGAAGAACACGCG
CGCGAGATGATTGTCCTCGGCCGCGAAAGAAAGGCTGTCAACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.559

98.78

0.49

Multiple sequence alignment