Detailed information NTG0268901

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DZ899_RS06950
• Genome accession: NZ_CP031660
• Coordinates: 1454068..1455072 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PABL017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1449068..1460072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DZ899_RS06920 (DZ899_06920)	fghA	1449160..1450011 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
DZ899_RS06925 (DZ899_06925)	ispF	1450082..1450555 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DZ899_RS06930 (DZ899_06930)	truD	1450552..1451619 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
DZ899_RS06935 (DZ899_06935)	surE	1451607..1452356 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
DZ899_RS06940 (DZ899_06940)	-	1452389..1453024 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DZ899_RS06945 (DZ899_06945)	-	1453070..1453963 (+)	894	WP_034014711.1	peptidoglycan DD-metalloendopeptidase family protein	-
DZ899_RS06950 (DZ899_06950)	rpoS	1454068..1455072 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
DZ899_RS06955 (DZ899_06955)	fdxA	1455499..1455822 (-)	324	WP_003119354.1	ferredoxin FdxA	-
DZ899_RS06960 (DZ899_06960)	mutS	1455889..1458456 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
DZ899_RS06970 (DZ899_06970)	-	1458582..1459589 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=268901 DZ899_RS06950 WP_003113871.1 1454068..1455072(+) (rpoS) [Pseudomonas aeruginosa strain PABL017]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=268901 DZ899_RS06950 WP_003113871.1 1454068..1455072(+) (rpoS) [Pseudomonas aeruginosa strain PABL017]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653