Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BA6348_RS12640 Genome accession   NZ_CP026363
Coordinates   2519203..2519589 (-) Length   128 a.a.
NCBI ID   WP_235694694.1    Uniprot ID   -
Organism   Brevibacillus agri strain DSM 6348     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2514203..2524589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA6348_RS12620 (BA6348_12615) - 2514732..2514956 (+) 225 WP_122952781.1 hypothetical protein -
  BA6348_RS12625 (BA6348_12620) - 2514960..2515394 (+) 435 WP_122952780.1 ABC transporter ATP-binding protein -
  BA6348_RS26700 - 2515363..2515515 (+) 153 WP_155808594.1 hypothetical protein -
  BA6348_RS12630 (BA6348_12625) - 2515575..2517413 (+) 1839 WP_005835938.1 ABC transporter ATP-binding protein -
  BA6348_RS12635 (BA6348_12630) - 2517382..2519118 (+) 1737 WP_122952779.1 ABC transporter ATP-binding protein -
  BA6348_RS12640 (BA6348_12635) nucA/comI 2519203..2519589 (-) 387 WP_235694694.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BA6348_RS12645 (BA6348_12640) - 2519819..2521126 (-) 1308 WP_005831067.1 MFS transporter -
  BA6348_RS12650 (BA6348_12645) - 2521362..2522960 (+) 1599 WP_122952778.1 amidohydrolase -
  BA6348_RS12655 (BA6348_12650) - 2523066..2523953 (-) 888 WP_005831071.1 DMT family transporter -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14136.64 Da        Isoelectric Point: 4.9555

>NTDB_id=268896 BA6348_RS12640 WP_235694694.1 2519203..2519589(-) (nucA/comI) [Brevibacillus agri strain DSM 6348]
MFAEQQGVPTDSAATQADVILHFPRERYPETAQHIRSAIEKGQPAVCTIDRKAADKHREESLSGIPTKRGYDRDEWPMAM
CKEGGKGADIAYVSPSDNRGAGSWIANQLEDYPDGTRVQIVIDDQPAH

Nucleotide


Download         Length: 387 bp        

>NTDB_id=268896 BA6348_RS12640 WP_235694694.1 2519203..2519589(-) (nucA/comI) [Brevibacillus agri strain DSM 6348]
CTGTTTGCCGAGCAGCAGGGCGTCCCGACCGACAGCGCTGCGACGCAGGCGGATGTCATTTTGCATTTTCCCCGCGAACG
GTATCCCGAGACGGCGCAGCACATTCGCTCCGCCATCGAAAAAGGCCAGCCTGCCGTCTGTACCATCGACCGCAAAGCGG
CGGACAAGCATCGCGAGGAATCGCTTTCCGGCATTCCGACGAAGCGCGGCTACGATCGGGACGAGTGGCCGATGGCGATG
TGCAAGGAAGGCGGCAAGGGCGCCGATATCGCTTACGTCTCCCCTTCCGACAACCGCGGAGCAGGCTCGTGGATTGCCAA
CCAGCTTGAGGATTACCCGGACGGCACCCGCGTGCAGATTGTCATTGACGATCAGCCCGCGCATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(25-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.459

86.719

0.516

Multiple sequence alignment