Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BV11031_RS22920 Genome accession   NZ_CP026362
Coordinates   1555987..1556448 (+) Length   153 a.a.
NCBI ID   WP_010328573.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1550987..1561448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS08320 (BV11031_08305) - 1551408..1552100 (-) 693 WP_129550724.1 HNH endonuclease signature motif containing protein -
  BV11031_RS08325 (BV11031_08310) - 1552103..1552320 (-) 218 Protein_1623 hypothetical protein -
  BV11031_RS08330 (BV11031_08315) - 1552471..1553282 (+) 812 Protein_1624 ATP-dependent DNA ligase -
  BV11031_RS22910 (BV11031_08320) - 1553639..1554013 (-) 375 WP_129550725.1 hypothetical protein -
  BV11031_RS22915 (BV11031_08325) - 1554030..1554263 (-) 234 WP_010328569.1 Rha family transcriptional regulator -
  BV11031_RS08345 (BV11031_08330) - 1554309..1554599 (-) 291 WP_010328570.1 hypothetical protein -
  BV11031_RS08350 (BV11031_08335) - 1554910..1555542 (+) 633 WP_010328571.1 HNH endonuclease family protein -
  BV11031_RS08355 (BV11031_08340) - 1555576..1555818 (+) 243 WP_010328572.1 hypothetical protein -
  BV11031_RS22920 rapC 1555987..1556448 (+) 462 WP_010328573.1 hypothetical protein Regulator
  BV11031_RS22925 - 1556435..1556950 (+) 516 WP_010328574.1 tetratricopeptide repeat protein -
  BV11031_RS08365 (BV11031_08350) - 1557101..1557740 (-) 640 Protein_1632 T7SS effector LXG polymorphic toxin -
  BV11031_RS08370 (BV11031_08355) - 1557831..1558670 (-) 840 WP_010328576.1 SMI1/KNR4 family protein -
  BV11031_RS08375 (BV11031_08360) glnA 1559092..1560426 (-) 1335 WP_010328577.1 type I glutamate--ammonia ligase -
  BV11031_RS08380 (BV11031_08365) glnR 1560485..1560892 (-) 408 WP_003238341.1 transcriptional repressor GlnR -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 18366.29 Da        Isoelectric Point: 8.7780

>NTDB_id=268873 BV11031_RS22920 WP_010328573.1 1555987..1556448(+) (rapC) [Bacillus vallismortis strain DSM 11031]
MKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNKERPKISDLLEKIESTQTKLKGVLEYYGNFFRGMNEFDKKEYIKAIRSY
KITEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMHYAEAALNIYKDQKTYTVRRIQCAFVIAGNFEFGKS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=268873 BV11031_RS22920 WP_010328573.1 1555987..1556448(+) (rapC) [Bacillus vallismortis strain DSM 11031]
ATGAAGGAAGACCAAGACTTATTGCTGTATTATTCTCTCATGTGTTTTCGTCATCAGCTAATGCTCGATTACCTTGAACC
TAAGTCCTTGAATAAAGAACGCCCTAAAATTTCAGACTTATTAGAAAAGATTGAAAGCACCCAAACAAAACTTAAAGGTG
TTCTTGAATACTACGGGAATTTCTTTAGAGGGATGAATGAATTTGATAAGAAAGAATATATAAAAGCAATAAGGTCTTAT
AAAATTACTGAGAAAAAGCTCGCTTTAGTAACAGATGAAATTGAACGAGCTGAATTCTATTTCAAAATGGCAGAAGTGTA
CTATCACATGAAACAAACCCATGTATCAATGCACTATGCTGAAGCAGCCCTTAATATTTATAAAGACCAAAAAACTTATA
CTGTTCGCCGAATACAATGTGCATTTGTTATAGCAGGTAACTTTGAATTTGGAAAGTCATGA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

60.403

97.386

0.588
  rapF Bacillus subtilis subsp. subtilis str. 168

56.667

98.039

0.556

Multiple sequence alignment