Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BV11031_RS12875 Genome accession   NZ_CP026362
Coordinates   2386827..2387405 (-) Length   192 a.a.
NCBI ID   WP_010329287.1    Uniprot ID   A0AAP3CGP7
Organism   Bacillus vallismortis strain DSM 11031     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2381827..2392405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS12845 (BV11031_12825) - 2382330..2382953 (-) 624 WP_082022488.1 TVP38/TMEM64 family protein -
  BV11031_RS12850 (BV11031_12830) - 2383105..2383467 (+) 363 WP_010329292.1 hypothetical protein -
  BV11031_RS12855 (BV11031_12835) - 2383690..2383890 (+) 201 WP_010329291.1 DUF3311 domain-containing protein -
  BV11031_RS12860 (BV11031_12840) - 2383887..2385356 (+) 1470 WP_010329290.1 sodium:solute symporter -
  BV11031_RS12865 (BV11031_12845) - 2385403..2385672 (-) 270 WP_010329289.1 excalibur calcium-binding domain-containing protein -
  BV11031_RS12870 (BV11031_12850) - 2385878..2386777 (+) 900 WP_010329288.1 SDR family oxidoreductase -
  BV11031_RS12875 (BV11031_12855) comK 2386827..2387405 (-) 579 WP_010329287.1 competence transcription factor ComK Regulator
  BV11031_RS12880 (BV11031_12860) - 2387698..2387931 (+) 234 WP_010329286.1 IDEAL domain-containing protein -
  BV11031_RS12885 (BV11031_12865) - 2387959..2388816 (-) 858 WP_010329285.1 SDR family oxidoreductase -
  BV11031_RS12890 (BV11031_12870) - 2388928..2390457 (+) 1530 WP_129550774.1 FAD-dependent oxidoreductase -
  BV11031_RS12895 (BV11031_12875) hemAT 2390595..2391893 (+) 1299 WP_010329283.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22354.63 Da        Isoelectric Point: 7.6610

>NTDB_id=268842 BV11031_RS12875 WP_010329287.1 2386827..2387405(-) (comK) [Bacillus vallismortis strain DSM 11031]
MSQKTDAPLESYEVNGATIAVLPEEVDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRVEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=268842 BV11031_RS12875 WP_010329287.1 2386827..2387405(-) (comK) [Bacillus vallismortis strain DSM 11031]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCTGTGCTGCCAGAAGAAGTCGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAACCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTTGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTAACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGGAAAACGATGGAGCTGC
CGATCTCCTGTAATTCGTTCGAGAACCAGGTGTACCGGACAGCATGGCTCAGAACCAAATTCCAAGACAGAGTCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGGGA
GTTGGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment