Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   BV11031_RS12810 Genome accession   NZ_CP026362
Coordinates   2373371..2376871 (-) Length   1166 a.a.
NCBI ID   WP_129550773.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2368371..2381871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS12800 (BV11031_12780) sbcD 2368431..2369606 (-) 1176 WP_010329300.1 exonuclease subunit SbcD -
  BV11031_RS12805 (BV11031_12785) addA 2369680..2373384 (-) 3705 WP_010329299.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BV11031_RS12810 (BV11031_12790) addB 2373371..2376871 (-) 3501 WP_129550773.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  BV11031_RS12815 (BV11031_12795) - 2377108..2378835 (-) 1728 WP_010329298.1 ABC transporter substrate-binding protein -
  BV11031_RS12820 (BV11031_12800) - 2378951..2380153 (+) 1203 WP_010329297.1 MFS transporter -
  BV11031_RS12825 (BV11031_12805) - 2380261..2381415 (+) 1155 WP_010329296.1 AbrB family transcriptional regulator -
  BV11031_RS12830 (BV11031_12810) - 2381435..2381638 (+) 204 WP_041952561.1 hypothetical protein -
  BV11031_RS12835 (BV11031_12815) - 2381663..2381746 (-) 84 Protein_2519 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134823.86 Da        Isoelectric Point: 5.6347

>NTDB_id=268841 BV11031_RS12810 WP_129550773.1 2373371..2376871(-) (addB) [Bacillus vallismortis strain DSM 11031]
MGAEFLVGRSGSGKTKLIIDSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTG
GMSRPFLTSTGVQMLLRKLIEEHKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESGTVSEYRGERVLSE
KLHDLSILYQQMEKSLSEQYLHSEDYLTLLAEHIPLSEDVKGAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKP
SYEREPHELELFRMTGKTYYRLHQKAKELNLDIAYKELSGTQRHERTPELAHLEAQYEARPAIPYAEKQEAFTVMQAANR
RAELEGIAREIHALVREKGYRYKDIAILARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSIDVLKGNWRY
EAVFRCVKTELLFPLNEPKTKVREQVDQLENYCIAYGIKGDRWTKGDRFHYRRFVSLDDDFAQTDQEIEMENMLNDTRDW
IVPPLFQLQKRMKKAKTVREKAEALYRYLEETDVPLKLDQERQRAEEDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEI
SLDLFQQMMEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKNIGIELS
SGGRERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPSIVIKRLEELFPQHMERLLTNEPEQVSDEEQLKYVVNKS
VAQSFTASQLRLWTREYNISDVWWSTYNVLMSQPDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNA
CPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKMDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSN
RHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGGKGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHIHDPMIQSNLPLGLDEIEQEIFKKFKMKGL
LLGDQEAVRLMDTTLQEGRSNIINAGLKKDGSLRSDSAAVGEKEFDLLTKHVRRTFQEAGEQITDGRVSIEPYKMKNKTP
CTYCSFKSVCQFDESLEENEYRPLKAEKDKTILEWIKKEADGNEHS

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=268841 BV11031_RS12810 WP_129550773.1 2373371..2376871(-) (addB) [Bacillus vallismortis strain DSM 11031]
TTGGGAGCAGAGTTTTTAGTAGGCAGGTCCGGGAGTGGAAAAACGAAGCTGATCATCGACAGCATACAGGATGAACTGCG
CCGGGCTCCATTCGGGAAACCAATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTGCTAAAA
CGCCTGATATGGGCGGAATGATACGTGCTCAAGTATTCAGCTTTTCACGTTTGGCCTGGCGCGTCCTCCAGCATACAGGG
GGAATGAGCAGGCCGTTTCTTACGAGCACAGGCGTACAGATGCTCCTGCGGAAGCTCATTGAGGAGCATAAACAGGAGTT
CAAAGTCTATCAAAAAGCGAGTGACAAAAGCGGATTTACCGCACAGGTTGAACGGATGTTGACCGAGTTTAAGCGTTACT
GTCTGGAGCCGGAGGATATCCGCCGGATGGCGGAAAGCGGAACGGTTTCCGAGTATCGCGGAGAACGTGTTTTATCTGAA
AAACTTCATGACCTATCAATTTTGTACCAGCAGATGGAAAAAAGCCTTTCAGAGCAATATCTTCACTCTGAAGATTATTT
GACATTGCTGGCAGAGCATATCCCGCTGTCTGAAGATGTAAAAGGCGCGCATATCTACGTGGACGGCTTTTATCAGTTTA
CACCGCAGGAATTCAGGGTGTTGGAGCAGCTGATGGTTCATGCAGAGCACATCACGTTTTCGCTCACAGCGGACAAGCCG
TCATACGAGCGGGAGCCGCATGAACTGGAATTGTTCAGAATGACGGGAAAAACCTATTACCGCCTGCATCAGAAGGCGAA
GGAACTGAATCTGGACATTGCGTATAAAGAGCTAAGCGGGACTCAGCGGCATGAGCGCACACCGGAACTGGCGCATTTGG
AGGCGCAGTATGAAGCGCGCCCGGCCATTCCGTACGCCGAAAAACAAGAGGCTTTTACGGTCATGCAGGCCGCAAACAGA
CGAGCTGAGCTGGAAGGCATTGCCCGGGAAATTCACGCGCTTGTCAGAGAGAAGGGGTATCGCTATAAGGATATAGCAAT
TCTTGCGCGCCAGCCGGAAGACTACAAGGATATGGTAAAGGAAGTTTTCGCGGATTACGAGATTCCTTATTTCATTGACG
GAAAAGCATCCATGCTGAACCATCCGTTAATCGAATTTATCCGGTCGAGCATTGATGTTCTGAAAGGGAATTGGCGGTAT
GAAGCGGTGTTTCGCTGCGTGAAAACCGAACTGCTATTCCCGCTTAACGAGCCGAAAACGAAGGTGAGGGAACAGGTTGA
TCAGCTTGAAAATTACTGTATCGCCTACGGGATTAAAGGCGATCGCTGGACAAAGGGCGACCGTTTCCATTACAGACGTT
TTGTGTCATTGGATGATGATTTTGCGCAAACCGATCAGGAAATCGAAATGGAAAACATGCTGAATGACACACGCGACTGG
ATTGTTCCGCCGCTTTTTCAGCTTCAAAAACGAATGAAAAAAGCAAAGACGGTTCGGGAGAAGGCGGAGGCACTCTACCG
CTATTTAGAAGAGACGGATGTGCCGCTGAAGCTGGATCAGGAAAGACAGCGTGCTGAAGAAGACGGCAGAATCATTGAAG
CGCAGCAGCATCAGCAGGCGTGGGATGCCGTCATTCAGCTGCTTGAAGAGTTTGTTGAAATGATGGGGGATGATGAGATT
TCCCTTGATTTGTTTCAGCAAATGATGGAAGCAGGCGCAGAGTCGCTTACATTTTCTCTTATTCCGCCTGCGCTTGACCA
GGTGTTTGTCGGCAATATGGATTTGTCCAGAATGTACGGCACCTCCTGCACCTTTGTGCTGGGGGCAAACGATGGCGTTC
TGCCGGCACGCCCTGATGAAAACGGGGTGCTGTCGGATGATGACCGGGAATGGCTGAAAAACATAGGGATTGAGCTTTCC
TCGGGTGGCCGGGAACGTCTCCTTGATGAGCATTTCCTCATTTATATGGCGTTTTCCAGTCCGTCTGACCGGCTTTACGT
ATCGTATCCGATTGCCGATGCGGAAGGAAAAACGCTTTTGCCGTCGATTGTCATTAAGCGGCTGGAAGAACTGTTTCCTC
AGCACATGGAGCGCCTGTTGACAAATGAACCTGAACAGGTCAGCGATGAGGAACAGCTTAAGTACGTCGTCAATAAAAGT
GTGGCACAGTCCTTTACCGCGAGCCAGCTCAGATTATGGACGCGGGAATACAACATCAGCGACGTCTGGTGGAGCACGTA
TAATGTGCTGATGAGTCAGCCGGACAGGCTGCAATCGAAAAAGCTGTTCTCAAGCCTGTTTTTCCGAAATGAAGTAAAGC
AGCTTGAACGCAGCGTGTCGAGACAGCTCTATGGCGAACGCATTCAGGGCAGTGTGTCGAGAATGGAAACCTTTAACGCG
TGCCCATTCTCCCATTTTGCTTCACACGGGCTGCATCTCAAGGAACGGCAATTTTTCAAGCTCGAAGCACCGGATATCGG
CCAGCTGTTTCATTCCAGCTTAAAGCTGATTTCAGACAGGCTGCGCGAGCAAAAAATGGATTGGCGCGATTTAACAAAAG
AGCAATGCGAGCTGTTTTCCTATGATGCGGTAGAGCGGCTGGCCCCAAAACTGCAAAAGGAAATTCTGCTCAGCTCAAAC
CGGCATTATTATGTGAAGGAAAAACTGCAAAAAATTGTGACACGCGTGTCCGGCATTTTAAGCGAGCATGCGAAAGCGAG
CGGATTTGTGCCGATCGGGCTAGAACTGGGCTTTGGAGGAAAAGGGCCGCTTCCGCCGCTGACCTTTACACTGAAAAACG
GCTGCACGATGGAACTCGTCGGGCGAATTGACCGTGTTGATAAAGCAGAAAGCTCAAAAGGTTTGCTTCTAAGGATTGTC
GATTATAAATCTAGCGACAAAGGCCTTGACTTAGCGGAAGTATATTACGGACTGGCGCTGCAAATGCTGACGTATCTTGA
TTTATCAATTACACATTCAGCCGACTGGCTCGGCATGAGAGCGACGCCGGCCGGAGTGCTGTATTTTCATATCCATGACC
CGATGATTCAATCTAATCTCCCGCTTGGGCTTGACGAGATTGAACAGGAGATTTTTAAGAAATTTAAGATGAAGGGCCTG
CTCCTCGGCGATCAGGAAGCGGTTCGCCTCATGGATACAACCCTTCAAGAGGGACGGTCAAATATCATCAACGCCGGCTT
GAAGAAAGACGGCTCTCTCAGATCGGATTCAGCGGCAGTCGGCGAAAAGGAGTTTGACCTGTTGACGAAGCATGTGCGCC
GCACCTTCCAAGAGGCAGGCGAACAAATCACCGACGGGCGCGTATCCATTGAGCCGTATAAAATGAAGAACAAGACGCCG
TGCACATACTGTTCGTTCAAATCAGTATGCCAATTCGATGAATCATTAGAAGAAAACGAGTATCGCCCGTTAAAGGCTGA
AAAGGACAAGACGATACTTGAGTGGATAAAAAAGGAGGCGGATGGCAATGAACATTCCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

97.17

100

0.972

Multiple sequence alignment