Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BV11031_RS10750 Genome accession   NZ_CP026362
Coordinates   1983244..1983522 (-) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus vallismortis strain DSM 11031     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978244..1988522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS10730 (BV11031_10725) ade 1978301..1980034 (-) 1734 WP_010328460.1 adenine deaminase -
  BV11031_RS10735 (BV11031_10730) ktrC 1980191..1980856 (-) 666 WP_010328461.1 Ktr system potassium transporter KtrC -
  BV11031_RS10740 (BV11031_10735) - 1980928..1981755 (-) 828 WP_026014447.1 gamma-glutamylcyclotransferase -
  BV11031_RS10745 (BV11031_10740) kinC 1981769..1983055 (-) 1287 WP_010328463.1 two-component sensor histidine kinase KinC -
  BV11031_RS10750 (BV11031_10745) abrB 1983244..1983522 (-) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  BV11031_RS10755 (BV11031_10750) mreBH 1983806..1984813 (+) 1008 WP_010328464.1 cell shape-determining protein MreBH -
  BV11031_RS10760 (BV11031_10755) - 1984914..1985048 (+) 135 WP_003238865.1 protein YkpC -
  BV11031_RS10765 (BV11031_10760) - 1985160..1986392 (+) 1233 WP_010328465.1 aminopeptidase -
  BV11031_RS10770 (BV11031_10765) - 1986422..1987333 (-) 912 WP_010328466.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=268828 BV11031_RS10750 WP_003238863.1 1983244..1983522(-) (abrB) [Bacillus vallismortis strain DSM 11031]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=268828 BV11031_RS10750 WP_003238863.1 1983244..1983522(-) (abrB) [Bacillus vallismortis strain DSM 11031]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAGTTAGGGCGTATTGTCATGCCGATCGAATTAAGACGGGCATTGGA
TATTGCGATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTATAAACCTCATGGGGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAATGGTAAGATTACGTTAAGCCCTGAGGGGGCACAG
CTGCTTCTCGAAGAAATCCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587

Multiple sequence alignment