Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BV11031_RS09900 Genome accession   NZ_CP026362
Coordinates   1813729..1814622 (-) Length   297 a.a.
NCBI ID   WP_010331112.1    Uniprot ID   A0AAP3FU34
Organism   Bacillus vallismortis strain DSM 11031     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1808729..1819622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS09885 (BV11031_09880) xerC 1809103..1810017 (-) 915 WP_010331109.1 tyrosine recombinase XerC -
  BV11031_RS09890 (BV11031_09885) trmFO 1810084..1811391 (-) 1308 WP_010331110.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BV11031_RS09895 (BV11031_09890) topA 1811467..1813542 (-) 2076 WP_010331111.1 type I DNA topoisomerase -
  BV11031_RS09900 (BV11031_09895) dprA 1813729..1814622 (-) 894 WP_010331112.1 DNA-processing protein DprA Machinery gene
  BV11031_RS09905 (BV11031_09900) sucD 1814683..1815585 (-) 903 WP_121642564.1 succinate--CoA ligase subunit alpha -
  BV11031_RS09910 (BV11031_09905) sucC 1815614..1816771 (-) 1158 WP_039073947.1 ADP-forming succinate--CoA ligase subunit beta -
  BV11031_RS09915 (BV11031_09910) - 1816946..1817227 (-) 282 WP_010331114.1 FlhB-like flagellar biosynthesis protein -
  BV11031_RS09920 (BV11031_09915) - 1817224..1818963 (-) 1740 WP_129550749.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32922.29 Da        Isoelectric Point: 9.6986

>NTDB_id=268827 BV11031_RS09900 WP_010331112.1 1813729..1814622(-) (dprA) [Bacillus vallismortis strain DSM 11031]
MDQAAACLMICRINQLLSPSLLLKWWKADASMSLTSPVLETVTRDKEKAAALKNKIEEHYPKLQRVLAAYRGQGIIPIPI
SSKQYPFWLKTIYDPPAVLFAKGDMALLSQGRKIGIVGTRNPTAYGIHVVNHLTKELCRKEWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=268827 BV11031_RS09900 WP_010331112.1 1813729..1814622(-) (dprA) [Bacillus vallismortis strain DSM 11031]
TTGGATCAGGCCGCTGCCTGTTTAATGATCTGCAGAATCAATCAACTATTATCCCCATCTCTTCTATTAAAATGGTGGAA
AGCCGATGCATCTATGTCGCTGACATCACCTGTTTTAGAAACTGTTACTCGCGATAAAGAAAAGGCAGCTGCATTAAAGA
ACAAAATTGAAGAACATTATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCGTGGGCAAGGCATTATCCCCATCCCGATT
TCTTCTAAACAATATCCTTTCTGGCTGAAAACGATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATATGGCCCT
TCTTTCTCAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACATGTTGTTAACCACCTTA
CAAAAGAGCTTTGCCGCAAAGAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATAGACGGAATGTCCCATGCGGCAAGC
ATTAAGGCGAAGGGGCGGACAATCGGCGTTATTGCAGGGGGATTTCAACACATTTATCCCCGCGAAAACCTTCAGTTAGC
AGATCACATGGCGAAACACCATATCCTTCTGTCAGAGCATCCACCTGAAACGAAACCCCAAAAATGGCATTTTCCTATGA
GAAATCGTATCATCAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCTCTGATTACTGCA
TATCAAGCACTGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

93.266

100

0.933
  dprA Streptococcus mutans UA159

44.898

82.492

0.37

Multiple sequence alignment