Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BV11031_RS06845 Genome accession   NZ_CP026362
Coordinates   1254444..1255064 (-) Length   206 a.a.
NCBI ID   WP_010330548.1    Uniprot ID   A0AAP3FV80
Organism   Bacillus vallismortis strain DSM 11031     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1249444..1260064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS06825 (BV11031_06805) dnaD 1249749..1250447 (+) 699 WP_010330543.1 DNA replication protein DnaD -
  BV11031_RS06830 (BV11031_06810) nth 1250466..1251125 (+) 660 WP_010330544.1 endonuclease III -
  BV11031_RS06835 (BV11031_06815) - 1251122..1251616 (+) 495 WP_010330545.1 YpoC family protein -
  BV11031_RS06840 (BV11031_06820) - 1251684..1254422 (-) 2739 WP_129550708.1 PBP1A family penicillin-binding protein -
  BV11031_RS06845 (BV11031_06825) recU 1254444..1255064 (-) 621 WP_010330548.1 Holliday junction resolvase RecU Machinery gene
  BV11031_RS06850 (BV11031_06830) - 1255105..1256067 (+) 963 WP_082246376.1 DUF2515 domain-containing protein -
  BV11031_RS06855 (BV11031_06835) sspM 1256092..1256196 (-) 105 WP_010330550.1 acid-soluble spore protein SspM -
  BV11031_RS06860 (BV11031_06840) - 1256397..1256642 (+) 246 WP_010330551.1 DUF5446 family protein -
  BV11031_RS06865 (BV11031_06845) - 1256688..1257059 (+) 372 WP_026014532.1 YppE family protein -
  BV11031_RS06870 (BV11031_06850) - 1257098..1257286 (-) 189 WP_010330553.1 YppF family protein -
  BV11031_RS06875 (BV11031_06855) - 1257472..1257843 (+) 372 WP_010330554.1 YppG family protein -
  BV11031_RS06880 (BV11031_06860) - 1257861..1258280 (-) 420 WP_010330555.1 Hsp20/alpha crystallin family protein -
  BV11031_RS06885 (BV11031_06865) - 1258419..1258925 (+) 507 WP_010330556.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23928.04 Da        Isoelectric Point: 9.4046

>NTDB_id=268823 BV11031_RS06845 WP_010330548.1 1254444..1255064(-) (recU) [Bacillus vallismortis strain DSM 11031]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVMAQDGICFVIISAFDQVYFLEADKLFDFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=268823 BV11031_RS06845 WP_010330548.1 1254444..1255064(-) (recU) [Bacillus vallismortis strain DSM 11031]
ATGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
CTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATAAAAGAAGCTTAC
TTCAAACAATCATCAACGACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACAAAAAA
CAAGACCTCTTTCCCCTTGCAGAATTTTCATGATCATCAAATCGAACATATGAAGCAGGTAATGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAACTGTTTGATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAATTAGAGGAAGCGGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATAGAACAGCTTTATTTTTCGCCGTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.573

100

0.976

Multiple sequence alignment