Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   BV11031_RS05655 Genome accession   NZ_CP026362
Coordinates   1035724..1035897 (-) Length   57 a.a.
NCBI ID   WP_010328257.1    Uniprot ID   A0AAP3CME1
Organism   Bacillus vallismortis strain DSM 11031     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1033823..1035175 1035724..1035897 flank 549


Gene organization within MGE regions


Location: 1033823..1035897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS05645 (BV11031_05615) - 1033823..1035175 (+) 1353 WP_129550698.1 IS1182 family transposase -
  BV11031_RS05650 (BV11031_05620) sinR 1035355..1035690 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BV11031_RS05655 (BV11031_05625) sinI 1035724..1035897 (-) 174 WP_010328257.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6646.67 Da        Isoelectric Point: 8.6596

>NTDB_id=268820 BV11031_RS05655 WP_010328257.1 1035724..1035897(-) (sinI) [Bacillus vallismortis strain DSM 11031]
MKNAKQEHFELDQEWVELMMKAKEANISPEEIRKYLLLNKKSAHPGPAARSHTINPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=268820 BV11031_RS05655 WP_010328257.1 1035724..1035897(-) (sinI) [Bacillus vallismortis strain DSM 11031]
ATGAAAAATGCAAAACAAGAGCACTTCGAATTAGATCAAGAATGGGTTGAATTGATGATGAAAGCCAAAGAGGCAAATAT
CAGCCCGGAAGAAATACGAAAATATTTACTTTTAAACAAAAAGTCTGCTCATCCTGGTCCGGCAGCCAGAAGTCATACCA
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

94.737

100

0.947

Multiple sequence alignment