Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BV11031_RS05295 Genome accession   NZ_CP026362
Coordinates   976356..977123 (+) Length   255 a.a.
NCBI ID   WP_010330695.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 971356..982123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS05265 (BV11031_05235) pgpH 971654..973789 (+) 2136 WP_082246387.1 cyclic-di-AMP phosphodiesterase PgpH -
  BV11031_RS05270 (BV11031_05240) ybeY 973790..974263 (+) 474 WP_010330701.1 rRNA maturation RNase YbeY -
  BV11031_RS05275 (BV11031_05245) - 974244..974615 (+) 372 WP_010330700.1 diacylglycerol kinase family protein -
  BV11031_RS05280 (BV11031_05250) - 974736..975146 (+) 411 WP_010330699.1 cytidine deaminase -
  BV11031_RS05285 (BV11031_05255) era 975127..976032 (+) 906 WP_010330698.1 GTPase Era -
  BV11031_RS05290 (BV11031_05260) - 976176..976319 (+) 144 WP_010330697.1 YqzL family protein -
  BV11031_RS05295 (BV11031_05265) recO 976356..977123 (+) 768 WP_010330695.1 DNA repair protein RecO Machinery gene
  BV11031_RS05300 (BV11031_05270) glyQ 977427..978314 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  BV11031_RS05305 (BV11031_05275) glyS 978307..980346 (+) 2040 WP_010330694.1 glycine--tRNA ligase subunit beta -
  BV11031_RS05310 (BV11031_05280) ccpN 980479..981117 (+) 639 WP_026014545.1 transcriptional regulator CcpN -
  BV11031_RS05315 (BV11031_05285) - 981143..981955 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.02 Da        Isoelectric Point: 8.5552

>NTDB_id=268811 BV11031_RS05295 WP_010330695.1 976356..977123(+) (recO) [Bacillus vallismortis strain DSM 11031]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKVGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSLRG
IREDLFLTAYAAYITELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSIRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQVESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=268811 BV11031_RS05295 WP_010330695.1 976356..977123(+) (recO) [Bacillus vallismortis strain DSM 11031]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAGTAGGTGTGATGGCCAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGCTCGTTCTTAATGCAAAAAACATCCGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCTTGAGAGGT
ATCAGGGAAGATCTGTTTTTAACAGCATATGCTGCTTATATCACCGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
GAACCCTTATTTGTTTGAATTCATTTTAGAATCGCTCAAACAGCTGAATGAAGGAACTGACCCGGACGTTATCATCTTTA
TCGTTCAAATGAAAATGCTCGGTGTCATGGGGCTGTATCCCGAGCTCAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACCTTTCATTTTTCTATCCGTGATAATGGTTTTATTTGCCACCGCTGTTTTGAAAAAGATCCTTACAGGGTTCCGATTAA
ACCGCAAACAGCAAGGCTGTTGAGACTGTTTTATTACTTTGATTTATCGAGGCTGGGCAATGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAAGAATACTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAGTGGAGAGCATGAAACATCTTATGGGCGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.471

100

0.965

Multiple sequence alignment