Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BV11031_RS03990 Genome accession   NZ_CP026362
Coordinates   745437..746183 (+) Length   248 a.a.
NCBI ID   WP_010330265.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740437..751183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS03975 (BV11031_03970) - 740666..740857 (-) 192 WP_010330262.1 hypothetical protein -
  BV11031_RS03980 (BV11031_03975) valS 741305..743947 (+) 2643 WP_010330263.1 valine--tRNA ligase -
  BV11031_RS03985 (BV11031_03980) - 744007..745299 (+) 1293 WP_010330264.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BV11031_RS03990 (BV11031_03985) comC 745437..746183 (+) 747 WP_010330265.1 A24 family peptidase Machinery gene
  BV11031_RS03995 (BV11031_03990) - 746317..747315 (+) 999 WP_010330266.1 SPOR domain-containing protein -
  BV11031_RS04000 (BV11031_03995) - 747467..748036 (+) 570 WP_010330267.1 Maf family nucleotide pyrophosphatase -
  BV11031_RS04005 (BV11031_04000) radC 748073..748768 (+) 696 WP_010330268.1 DNA repair protein RadC -
  BV11031_RS04010 (BV11031_04005) mreB 748860..749873 (+) 1014 WP_010330269.1 cell shape-determining protein MreB -
  BV11031_RS04015 (BV11031_04010) mreC 749904..750776 (+) 873 WP_010330270.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26408.93 Da        Isoelectric Point: 9.7080

>NTDB_id=268804 BV11031_RS03990 WP_010330265.1 745437..746183(+) (comC) [Bacillus vallismortis strain DSM 11031]
MLPILFILGLILGSFYYTAGCRIPLHKSIVKPRSACSFCRQTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGSSLELFPAVVFISLLIMAAVTDIHYMLIPNKILIFFLPFLGAARLISPLDSWYADLLGAAAGFVFLALF
AAITGGGIGGGDIKLFAVIGFVLGMKMLAAAFFFSVLIGALYGSAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKIALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=268804 BV11031_RS03990 WP_010330265.1 745437..746183(+) (comC) [Bacillus vallismortis strain DSM 11031]
ATGCTCCCCATTCTTTTTATTCTCGGGCTGATCCTTGGTTCGTTTTATTATACGGCCGGGTGCCGTATCCCCTTGCATAA
ATCTATTGTCAAACCCCGTTCGGCATGCTCGTTTTGCCGGCAGACATTAACTCCAGCAGAATTAATTCCCATCCTGTCAT
TTCTATTCCAAAAAGGAAAATGTAAAAGCTGCGGGCATAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGGTTTGGCTCGTCTTTGGAGCTGTTTCCCGCTGTCGTGTTTATCTCTCTTCTGAT
CATGGCAGCAGTGACAGATATTCATTATATGCTGATTCCAAATAAAATATTGATTTTCTTTCTTCCCTTTTTGGGTGCTG
CCAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGATCTGTTAGGTGCGGCTGCCGGATTTGTATTTCTGGCCTTATTT
GCGGCAATCACAGGTGGCGGAATAGGAGGAGGAGATATTAAATTATTTGCGGTCATTGGCTTTGTGCTAGGTATGAAAAT
GTTGGCAGCTGCCTTTTTCTTTTCCGTTTTAATAGGTGCATTGTATGGATCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCTGGGAGTATTTTAGCCTATTTATACGGCGACTCTATTATTTCT
TTTTATATAAAGATAGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

90.726

100

0.907

Multiple sequence alignment