Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DL545_RS15250 Genome accession   NZ_CP031653
Coordinates   2929452..2929928 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain UK_Dog_Liverpool     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2924452..2934928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL545_RS15205 (DL545_15205) ghrA 2924577..2925515 (-) 939 WP_000351311.1 glyoxylate/hydroxypyruvate reductase GhrA -
  DL545_RS15215 (DL545_15215) - 2925986..2926827 (-) 842 Protein_2806 DUF4942 domain-containing protein -
  DL545_RS15220 (DL545_15220) - 2926912..2927109 (-) 198 WP_000839253.1 DUF957 domain-containing protein -
  DL545_RS15225 (DL545_15225) - 2927126..2927614 (-) 489 WP_032180032.1 DUF5983 family protein -
  DL545_RS15230 (DL545_15230) - 2927611..2927994 (-) 384 WP_000854686.1 TA system toxin CbtA family protein -
  DL545_RS15235 (DL545_15235) cbeA 2928075..2928455 (-) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DL545_RS15240 (DL545_15240) - 2928466..2929149 (-) 684 WP_000086768.1 hypothetical protein -
  DL545_RS15245 (DL545_15245) yeeT 2929168..2929389 (-) 222 WP_000692298.1 DUF987 domain-containing protein -
  DL545_RS15250 (DL545_15250) radC 2929452..2929928 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  DL545_RS15255 (DL545_15255) - 2929944..2930429 (-) 486 WP_000214307.1 antirestriction protein -
  DL545_RS15260 (DL545_15260) - 2930521..2931342 (-) 822 WP_001761104.1 DUF932 domain-containing protein -
  DL545_RS15270 (DL545_15270) - 2931443..2931651 (-) 209 Protein_2816 DUF905 family protein -
  DL545_RS15275 (DL545_15275) - 2931752..2932207 (-) 456 WP_000581506.1 IrmA family protein -
  DL545_RS15280 (DL545_15280) - 2932283..2934799 (-) 2517 WP_001531238.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=268746 DL545_RS15250 WP_001186726.1 2929452..2929928(-) (radC) [Escherichia coli strain UK_Dog_Liverpool]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=268746 DL545_RS15250 WP_001186726.1 2929452..2929928(-) (radC) [Escherichia coli strain UK_Dog_Liverpool]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392