Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C2R09_RS05240 Genome accession   NZ_CP026354
Coordinates   1021138..1021767 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 3FA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016138..1026767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2R09_RS05215 ycbZ 1016539..1018299 (-) 1761 WP_000156518.1 Lon protease family protein -
  C2R09_RS05220 matP 1018485..1018937 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C2R09_RS05225 ompA 1019013..1020053 (-) 1041 WP_000750416.1 porin OmpA -
  C2R09_RS05235 sulA 1020410..1020919 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C2R09_RS05240 sxy/tfoX 1021138..1021767 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C2R09_RS05245 yccS 1021730..1023892 (-) 2163 WP_000875061.1 YccS family putative transporter -
  C2R09_RS05250 yccF 1023902..1024348 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C2R09_RS05255 helD 1024471..1026525 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=268621 C2R09_RS05240 WP_000839153.1 1021138..1021767(+) (sxy/tfoX) [Escherichia coli strain 3FA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=268621 C2R09_RS05240 WP_000839153.1 1021138..1021767(+) (sxy/tfoX) [Escherichia coli strain 3FA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment