Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MMC1_RS01385 Genome accession   NC_008576
Coordinates   299982..301340 (+) Length   452 a.a.
NCBI ID   WP_011711962.1    Uniprot ID   A0L497
Organism   Magnetococcus marinus MC-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 294982..306340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMC1_RS01370 (Mmc1_0260) - 295056..296051 (+) 996 WP_011711959.1 ABC transporter substrate-binding protein -
  MMC1_RS01375 (Mmc1_0261) - 296065..298911 (+) 2847 WP_011711960.1 ATP-binding protein -
  MMC1_RS01380 (Mmc1_0262) - 299087..299884 (+) 798 WP_011711961.1 SPOR domain-containing protein -
  MMC1_RS01385 (Mmc1_0263) radA 299982..301340 (+) 1359 WP_011711962.1 DNA repair protein RadA Machinery gene
  MMC1_RS01390 (Mmc1_0264) - 301458..302108 (+) 651 WP_011711963.1 CvpA family protein -
  MMC1_RS01395 (Mmc1_0265) purF 302282..303712 (+) 1431 WP_011711964.1 amidophosphoribosyltransferase -
  MMC1_RS01400 (Mmc1_0266) flgB 304016..304429 (+) 414 WP_011711965.1 flagellar basal body rod protein FlgB -
  MMC1_RS01405 (Mmc1_0267) flgC 304526..304951 (+) 426 WP_011711966.1 flagellar basal body rod protein FlgC -
  MMC1_RS01410 (Mmc1_0268) fliE 304966..305277 (+) 312 WP_011711967.1 flagellar hook-basal body complex protein FliE -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48386.13 Da        Isoelectric Point: 7.7035

>NTDB_id=26851 MMC1_RS01385 WP_011711962.1 299982..301340(+) (radA) [Magnetococcus marinus MC-1]
MAKAKEQFVCTECGAEYSQWQGKCHTCQAWNSLKAFTPAKKGARAAHPTLGVAMEPITLDSVAGGEAPRIQIGISELDRV
LGGGLVSGAAILIGGDPGIGKSTLLMGALAKLSTSLRVLYVSGEESLIQLKLRAERMGVDGANFWVFMENRLEAVEEAVN
KQQPDVLVVDSIQTIAGDEIPSAAGTVTQVRECASRMIQWAKRRNMALFLIGHVTKEGQIAGPRILEHMVDTVLYFEGER
GHSYRILRAVKNRFGAANEIGVFEMRENGLAQVTNPSELFLAERVGGAAGSVVYAGLEGTRPVLIEIQSLVTPSPLPQPR
RNTVGIDTNRLAMLIAVLEKRLGLGLFNHDIFLNVAGGFRINEPSADLAVTLSLYAALRNISLDPGMVVLGEVGLAGEVR
AVSHATTRLKEAQKLGFTRCILPKKSMKGVPDGLGITLHPVALIEDAIALLA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=26851 MMC1_RS01385 WP_011711962.1 299982..301340(+) (radA) [Magnetococcus marinus MC-1]
ATGGCTAAGGCAAAAGAACAGTTTGTCTGTACCGAGTGCGGGGCAGAGTACAGTCAGTGGCAAGGAAAATGTCACACCTG
CCAAGCATGGAACAGTCTCAAGGCATTTACCCCGGCTAAAAAAGGGGCGCGTGCGGCCCATCCCACCCTTGGGGTGGCCA
TGGAGCCCATTACTCTGGATAGCGTGGCGGGGGGTGAAGCCCCCCGCATTCAAATTGGGATCTCAGAGCTAGATCGGGTG
CTGGGTGGGGGTTTGGTCTCTGGGGCCGCCATCTTAATTGGTGGGGATCCAGGCATCGGTAAATCGACCTTGCTCATGGG
GGCGTTGGCCAAATTGAGCACCAGCCTGCGGGTGTTGTATGTCTCGGGTGAAGAGTCGCTGATACAGCTCAAGCTGCGGG
CGGAGCGCATGGGGGTGGATGGCGCCAACTTTTGGGTGTTCATGGAAAACCGCTTAGAGGCGGTGGAAGAGGCGGTAAAT
AAACAGCAGCCTGATGTGCTGGTGGTGGACTCAATCCAGACCATCGCCGGGGATGAAATTCCCTCTGCTGCGGGCACGGT
GACCCAGGTGCGGGAGTGTGCCTCGCGCATGATTCAGTGGGCTAAGCGGCGCAATATGGCGCTCTTTCTCATCGGTCATG
TGACCAAAGAGGGGCAGATTGCTGGTCCGCGTATTTTGGAGCATATGGTGGATACGGTGCTCTATTTTGAGGGGGAGCGG
GGCCATAGTTACCGTATTTTACGGGCGGTTAAAAACCGCTTTGGGGCGGCCAATGAGATTGGCGTGTTCGAGATGCGTGA
GAACGGTTTGGCGCAGGTAACCAACCCTTCAGAGCTGTTTTTAGCCGAGCGGGTAGGTGGAGCGGCGGGCTCGGTGGTTT
ATGCGGGGTTGGAGGGCACACGGCCCGTTTTGATTGAAATTCAATCCCTGGTTACCCCCAGCCCGCTCCCCCAACCCCGG
CGCAACACGGTGGGGATAGATACCAACCGCTTAGCGATGCTCATTGCGGTGTTGGAGAAACGGTTGGGGTTGGGGCTGTT
TAACCACGATATTTTTCTGAATGTGGCGGGGGGATTTCGCATCAATGAGCCCTCGGCGGATTTGGCAGTGACGCTCTCCC
TTTATGCAGCGTTGCGAAACATTAGTCTGGACCCTGGCATGGTGGTGCTGGGCGAGGTGGGTCTGGCAGGGGAGGTGCGG
GCGGTCTCCCACGCGACGACCCGTTTAAAAGAGGCGCAAAAATTAGGTTTTACCCGCTGTATTTTACCAAAAAAAAGTAT
GAAAGGGGTGCCCGATGGGTTGGGTATTACCCTGCATCCGGTGGCGCTGATTGAAGATGCTATTGCGCTGTTGGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0L497

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.549

100

0.509
  radA Streptococcus mitis SK321

47.321

99.115

0.469
  radA Streptococcus mitis NCTC 12261

47.321

99.115

0.469
  radA Streptococcus pneumoniae Rx1

48.605

95.133

0.462
  radA Streptococcus pneumoniae D39

48.605

95.133

0.462
  radA Streptococcus pneumoniae R6

48.605

95.133

0.462
  radA Streptococcus pneumoniae TIGR4

48.605

95.133

0.462

Multiple sequence alignment