Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PRJ_RS25310 Genome accession   NZ_CP026332
Coordinates   5417743..5418144 (-) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas sp. XWY-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5412743..5423144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRJ_RS25295 (PRJ_5011) - 5414707..5416731 (-) 2025 WP_256597971.1 methyl-accepting chemotaxis protein -
  PRJ_RS25300 (PRJ_5012) - 5416779..5417333 (-) 555 WP_010955559.1 chemotaxis protein CheW -
  PRJ_RS25305 (PRJ_5013) pilH 5417330..5417695 (-) 366 WP_003249327.1 twitching motility response regulator PilH -
  PRJ_RS25310 (PRJ_5014) pilG 5417743..5418144 (-) 402 WP_010955560.1 PleD family two-component system response regulator Regulator
  PRJ_RS25315 (PRJ_5016) gshB 5418383..5419336 (+) 954 WP_104962686.1 glutathione synthase -
  PRJ_RS25320 (PRJ_5017) - 5419428..5420333 (+) 906 WP_014592660.1 energy transducer TonB -
  PRJ_RS25325 (PRJ_5018) - 5420503..5421072 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  PRJ_RS25330 (PRJ_5019) ruvX 5421072..5421497 (+) 426 WP_010955563.1 Holliday junction resolvase RuvX -
  PRJ_RS25335 (PRJ_5020) pyrR 5421547..5422065 (+) 519 WP_020191541.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PRJ_RS25340 (PRJ_5021) - 5422078..5423082 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=268274 PRJ_RS25310 WP_010955560.1 5417743..5418144(-) (pilG) [Pseudomonas sp. XWY-1]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=268274 PRJ_RS25310 WP_010955560.1 5417743..5418144(-) (pilG) [Pseudomonas sp. XWY-1]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment